Browse Element(s) Details


Os.27389.2.S1_a_at

Description gb:AK072609.1
DB_XREF= gi:32982632
TID=Os.27389.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132H22, full insert sequence.
FL= gb:AK065003.1 gb:AK072609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2250011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22440Os.9979.1.S1_at11/119+13552672..13557088expressed protein
LOC_Os09g22450Os.6774.1.S1_at11/119+13558547..13562069Lipase family protein, expressed
LOC_Os09g22460OsAffx.29976.1.S1_at11/119+13562564..13563715F-box domain containing protein
LOC_Os09g22470OsAffx.17850.1.S1_at11/119+13564643..13565788hypothetical protein
LOC_Os09g22480NANA9+13566936..13567319hypothetical protein
LOC_Os09g22490NANA9+13568371..13568598hypothetical protein
LOC_Os09g22500Os.27389.2.S1_a_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_s_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_at5/119+13570645..13575072hypothetical protein
LOC_Os09g22500Os.52345.1.S1_at1/119+13570645..13575072hypothetical protein
LOC_Os09g22510Os.8846.1.S1_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.12988.1.S1_x_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.4565.1.S1_at1/119+13577168..13580613hypothetical protein
LOC_Os09g22520OsAffx.17849.1.S1_at1/119+13582619..13583644hypothetical protein
LOC_Os09g22530OsAffx.6368.1.S1_at10/119+13584768..13585925expressed protein
LOC_Os09g22540Os.50915.1.S1_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.29979.1.S1_s_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.29979.1.S1_x_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540Os.50043.1.A1_at1/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.23616.1.S1_at1/119+13594421..13600888transcription factor jumonji, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27389.2.S1_a_at--352--6631Chr09:13573688..13573712 (25 bp)
GTTGGGCCTCCGATGCGCGAAGACC
LOC_Os09g22500
Os.27389.2.S1_a_at--1010--7091Chr09:13573178..13573202 (25 bp)
GTCAGAGATCCATAATTTCGTCGCT
LOC_Os09g22500
Os.27389.2.S1_a_at--33--3131Chr09:13573165..13573189 (25 bp)
AATTTCGTCGCTTCAGGAGGATAAA
LOC_Os09g22500
Os.27389.2.S1_a_at--210--3311Chr09:13573136..13573160 (25 bp)
CACACATCGTTTTGGGTGTCCGGTA
LOC_Os09g22500
Os.27389.2.S1_a_at--704--3111Chr09:13573108..13573132 (25 bp)
AATATTGTTCATTTCACCCTCTGGG
LOC_Os09g22500
Os.27389.2.S1_a_at--685--3351Chr09:13573094..13573118 (25 bp)
CACCCTCTGGGTTGTCTTTCAAAAG
LOC_Os09g22500
Os.27389.2.S1_a_at--858--10351Chr09:13573049..13573073 (25 bp)
TTTTTCCTTCTTCAATCACTGGTGA
LOC_Os09g22500
Os.27389.2.S1_a_at--497--2391Chr09:13573011..13573035 (25 bp)
AAACTGAGCTAAAATGCACGGCCAT
LOC_Os09g22500
Os.27389.2.S1_a_at--597--5091Chr09:13572996..13573020 (25 bp)
GCACGGCCATTCCAATATTCCAATT
LOC_Os09g22500
Os.27389.2.S1_a_at--290--7531Chr09:13572958..13572982 (25 bp)
GTGGACTCACACGAGGATTTTGAAA
LOC_Os09g22500
Os.27389.2.S1_a_at--137--5571Chr09:13572937..13572961 (25 bp)
GAAAGACTTCTACTATTGTGGATTA
LOC_Os09g22500
Target Sequence 
GTTGGGCCTCCGATGCGCGAAGACCTGGGGCTCTGAGGTCATGAGGAGGACTTTATTTTGGGGAGAGGATTTGATGAGCA
TGGAGGATGTGCAGTGCTCCAAGTCGGAAAGCTTTTTTTTTNACCATTACTGCTGCCGAGGAAGCTCAATCTCTGTCGGG
ATGGTAATTACGGAAGGGGTTATCTTAGTATGGTGTGGTTTATGAAATTCAGAGATCGGTTATCTTATTATGGTGTGGTT
TATAAAGTCAGAGATCCATAATTTCGTCGCTTCAGGAGGATAAAGGAACACACATCGTTTTGGGTGTCCGGTACCAAATA
TTGTTCATTTCACCCTCTGGGTTGTCTTTCAAAAGGTGTCAGAGTGATGGTTTTTTTTTTTCCTTCTTCAATCACTGGTG
ATATATAGTTTTGCAAACTGAGCTAAAATGCACGGCCATTCCAATATTCCAATTGTTCTGTATTTATGTGGACTCACACG
AGGATTTTGAAAGACTTCTACTATTGTGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27389.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis