Browse Element(s) Details


Os.9979.1.S1_at

Description gb:AK120392.1
DB_XREF= gi:37990015
TID=Os.9979.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074N02, full insert sequence.
FL= gb:AK120392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2244011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22400OsAffx.17848.3.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.1.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.5.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.2.S1_x_at2/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.1.S1_at2/119+13527868..13530733hypothetical protein
LOC_Os09g22410Os.18503.1.S1_s_at11/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22410Os.18503.1.S1_at7/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22410OsAffx.6365.1.S1_at3/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22420OsAffx.17849.1.S1_at11/119+13536731..13537689hypothetical protein
LOC_Os09g22420OsAffx.6361.1.S1_at2/119+13536731..13537689hypothetical protein
LOC_Os09g22430OsAffx.6366.1.S1_at11/119+13538170..13539189hypothetical protein
LOC_Os09g22440Os.9979.1.S1_at11/119+13552672..13557088expressed protein
LOC_Os09g22450Os.6774.1.S1_at11/119+13558547..13562069Lipase family protein, expressed
LOC_Os09g22460OsAffx.29976.1.S1_at11/119+13562564..13563715F-box domain containing protein
LOC_Os09g22470OsAffx.17850.1.S1_at11/119+13564643..13565788hypothetical protein
LOC_Os09g22480NANA9+13566936..13567319hypothetical protein
LOC_Os09g22490NANA9+13568371..13568598hypothetical protein
LOC_Os09g22500Os.27389.2.S1_a_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_s_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_at5/119+13570645..13575072hypothetical protein
LOC_Os09g22500Os.52345.1.S1_at1/119+13570645..13575072hypothetical protein
LOC_Os09g22510Os.8846.1.S1_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.12988.1.S1_x_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.4565.1.S1_at1/119+13577168..13580613hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9979.1.S1_at--726--10191Chr09:13556366..13556390 (25 bp)
TATTCACGCCTTTTGCAGAGTCGAT
LOC_Os09g22440
Os.9979.1.S1_at--654--8931Chr09:13556396..13556569 (25 bp)
TGACCGAGTTCACTATACGCGACGC
LOC_Os09g22440
Os.9979.1.S1_at--689--1831Chr09:13556561..13556585 (25 bp)
ACGCGACGCGTACATGCTCAAGATT
LOC_Os09g22440
Os.9979.1.S1_at--200--6531Chr09:13556582..13556606 (25 bp)
GATTTTCGAAGATAACCAGGCCAGA
LOC_Os09g22440
Os.9979.1.S1_at--473--8071Chr09:13556675..13556699 (25 bp)
GGAGCTACCGGAGTACAACACAATA
LOC_Os09g22440
Os.9979.1.S1_at--152--9011Chr09:13556716..13556740 (25 bp)
TGAATGAGAACTGCCCATCTTTACC
LOC_Os09g22440
Os.9979.1.S1_at--1018--6491Chr09:13556851..13556875 (25 bp)
GATAGATCGCAGTTTTCACACGTAA
LOC_Os09g22440
Os.9979.1.S1_at--214--9771Chr09:13556873..13556897 (25 bp)
TAAGGAAGGTGACCCTCAGGTTTCT
LOC_Os09g22440
Os.9979.1.S1_at--653--9631Chr09:13556888..13556912 (25 bp)
TCAGGTTTCTGCCTGTTACGAGAGC
LOC_Os09g22440
Os.9979.1.S1_at--482--6731Chr09:13556914..13556938 (25 bp)
GTTCTTGAGCTCAGGCATCCAATAT
LOC_Os09g22440
Os.9979.1.S1_at--478--5831Chr09:13556947..13556971 (25 bp)
GACCTGTCTAAGAATTTGCTCACAA
LOC_Os09g22440
Target Sequence 
TATTCACGCCTTTTGCAGAGTCGATTCAGGTGACCGAGTTCACTATACGCGACGCGTACATGCTCAAGATTTTCGAAGAT
AACCAGGCCAGACTTCCAAGCTGGTGCAACACAGAATCTGACAAGCTCCCCTTCTGCCAGATCCTGGGGGAGTACAGGAT
GGAGCTACCGGAGTACAACACAATAGAACCGTATGCCAAAATGAATGAGAACTGCCCATCTTTACCCCCAACGTACAAGC
GGCCAGCGCGTTGCTGACACTGTGCCCCCACAACTGAAAGTAGGATGTTGTTTGAAAGTTTATCATGTAAGTAAATCATA
TTGTATATAGGTGTTTGATAGATCGCAGTTTTCACACGTAAGGAAGGTGACCCTCAGGTTTCTGCCTGTTACGAGAGCTN
GTTCTTGAGCTCAGGCATCCAATATGAAGGACTGACCTGTCTAAGAATTTGCTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis