Browse Element(s) Details


OsAffx.12988.1.S1_x_at

Description tigr:9637.m01962
TID=OsAffx.12988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2251011/11hypothetical protein
LOC_Os03g222509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22440Os.9979.1.S1_at11/119+13552672..13557088expressed protein
LOC_Os09g22450Os.6774.1.S1_at11/119+13558547..13562069Lipase family protein, expressed
LOC_Os09g22460OsAffx.29976.1.S1_at11/119+13562564..13563715F-box domain containing protein
LOC_Os09g22470OsAffx.17850.1.S1_at11/119+13564643..13565788hypothetical protein
LOC_Os09g22480NANA9+13566936..13567319hypothetical protein
LOC_Os09g22490NANA9+13568371..13568598hypothetical protein
LOC_Os09g22500Os.27389.2.S1_a_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_s_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_at5/119+13570645..13575072hypothetical protein
LOC_Os09g22500Os.52345.1.S1_at1/119+13570645..13575072hypothetical protein
LOC_Os09g22510Os.8846.1.S1_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.12988.1.S1_x_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.4565.1.S1_at1/119+13577168..13580613hypothetical protein
LOC_Os09g22520OsAffx.17849.1.S1_at1/119+13582619..13583644hypothetical protein
LOC_Os09g22530OsAffx.6368.1.S1_at10/119+13584768..13585925expressed protein
LOC_Os09g22540Os.50915.1.S1_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.29979.1.S1_s_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.29979.1.S1_x_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540Os.50043.1.A1_at1/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.23616.1.S1_at1/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22550NANA9+13602143..13602367retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12988.1.S1_x_at--385--9313Chr09:13579253..13579277 (25 bp)
TCCCTGCCCTGAGTCCGGTAGGTGG
LOC_Os09g22510
OsAffx.12988.1.S1_x_at--516--4273Chr09:13579260..13579284 (25 bp)
CCTGAGTCCGGTAGGTGGCCATGAC
LOC_Os09g22510
OsAffx.12988.1.S1_x_at--485--6913Chr09:13579270..13579294 (25 bp)
GTAGGTGGCCATGACGAAGATGTCA
LOC_Os09g22510
OsAffx.12988.1.S1_x_at--591--1852Chr09:13579283..13579307 (25 bp)
ACGAAGATGTCATTCTCCAGCAGCG
LOC_Os09g22510
OsAffx.12988.1.S1_x_at--349--1592Chr09:13579445..13579469 (25 bp)
AGCTCGTCCTGGTGGTGCTGCAGCA
LOC_Os09g22510
OsAffx.12988.1.S1_x_at--625--3832Chr09:13579462..13579486 (25 bp)
CTGCAGCACGTAGTCGGCGTAGGAC
LOC_Os09g22510
OsAffx.12988.1.S1_x_at--486--4193Chr09:13579716..13579740 (25 bp)
CCCGTTTCCTGAACAAAGCTTCGTG
LOC_Os09g22510
OsAffx.12988.1.S1_x_at--663--2332Chr09:13579730..13579754 (25 bp)
AAAGCTTCGTGCAGCAAAACTTTGC
LOC_Os09g22510
OsAffx.12988.1.S1_x_at--99--5152Chr09:13579743..13579767 (25 bp)
GCAAAACTTTGCTTTCTCCATCAGT
LOC_Os09g22510
OsAffx.12988.1.S1_x_at--861--4872Chr09:13579753..13579777 (25 bp)
GCTTTCTCCATCAGTTTTTTCCCTT
LOC_Os09g22510
OsAffx.12988.1.S1_x_at--129--10151Chr09:13579776..13579800 (25 bp)
TTCCCGACGTTGTGCTTGTCTAATG
LOC_Os09g22510
Target Sequence 
TCCCTGCCCTGAGTCCGGTAGGTGGCCATGACGAAGATGTCATTCTCCAGCAGCGCCCTCGTCCTCGTGCTGCCGTCCGT
CGTGTCCGGCACCACCGGCTCGCAGGTGAGGGCGCCGGCGTTGGCGCGGGCGAAGGGCTCGGAGCCGGCGGGGTCGAGGA
CGGCCTCGTGGAGGAGGGACCAGGCGCGGACGAGCTCGTCCTGGTGGTGCTGCAGCACGTAGTCGGCGTAGGACGCGGCG
GAGGAGCCCCCGCCGGCCGGGACGAGGGTGCGGCTGACGGTGGTGAGCGAGAAGCGGCGCGGGGAGGAGGAGGTGTGCTC
GGAGAAGACGCCGCGGGAGGCGAGGAGGCGGAGGAGGCGGTGGAGGACGGAGAGAGAGGACACAAGAAGAAGACGAGAGG
GGACAGACACAAATGGAAGAAGAAAAAGAATGAAGAAGAAGCAGCAGCAGAGCTCTTGTTTCCCCCGTTTCCTGAACAAA
GCTTCGTGCAGCAAAACTTTGCTTTCTCCATCAGTTTTTTCCCTTCCCGACGTTGTGCTTGTCTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12988.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis