Browse Element(s) Details


OsAffx.17850.1.S1_at

Description tigr:9637.m01957
TID=OsAffx.17850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2247011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22440Os.9979.1.S1_at11/119+13552672..13557088expressed protein
LOC_Os09g22450Os.6774.1.S1_at11/119+13558547..13562069Lipase family protein, expressed
LOC_Os09g22460OsAffx.29976.1.S1_at11/119+13562564..13563715F-box domain containing protein
LOC_Os09g22470OsAffx.17850.1.S1_at11/119+13564643..13565788hypothetical protein
LOC_Os09g22480NANA9+13566936..13567319hypothetical protein
LOC_Os09g22490NANA9+13568371..13568598hypothetical protein
LOC_Os09g22500Os.27389.2.S1_a_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_s_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_at5/119+13570645..13575072hypothetical protein
LOC_Os09g22500Os.52345.1.S1_at1/119+13570645..13575072hypothetical protein
LOC_Os09g22510Os.8846.1.S1_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.12988.1.S1_x_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.4565.1.S1_at1/119+13577168..13580613hypothetical protein
LOC_Os09g22520OsAffx.17849.1.S1_at1/119+13582619..13583644hypothetical protein
LOC_Os09g22530OsAffx.6368.1.S1_at10/119+13584768..13585925expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17850.1.S1_at--623--7831Chr09:13564906..13564930 (25 bp)
GGTAAATGATACCTTGCTCCTCTAC
LOC_Os09g22470
OsAffx.17850.1.S1_at--874--2231Chr09:13564945..13564969 (25 bp)
ACAATTGCTAGCCAACAGCGGACTA
LOC_Os09g22470
OsAffx.17850.1.S1_at--497--8231Chr09:13565318..13565342 (25 bp)
GGCAAGTTCTGCACGGCGTTTTTTA
LOC_Os09g22470
OsAffx.17850.1.S1_at--349--3571Chr09:13565331..13565355 (25 bp)
CGGCGTTTTTTAGCACTGTCGTGAC
LOC_Os09g22470
OsAffx.17850.1.S1_at--58--8731Chr09:13565347..13565371 (25 bp)
TGTCGTGACATTAGATTTCTCCCCG
LOC_Os09g22470
OsAffx.17850.1.S1_at--85--10591Chr09:13565363..13565387 (25 bp)
TTCTCCCCGAATCCAACATTTGATA
LOC_Os09g22470
OsAffx.17850.1.S1_at--740--6511Chr09:13565384..13565408 (25 bp)
GATATTGTTGCTGTTACACTGGTAC
LOC_Os09g22470
OsAffx.17850.1.S1_at--225--6651Chr09:13565461..13565485 (25 bp)
GTTGTTCTGCTTGTACTTCTACCCT
LOC_Os09g22470
OsAffx.17850.1.S1_at--309--1811Chr09:13565481..13565505 (25 bp)
ACCCTCCAGGAGCATGTTCTAATAA
LOC_Os09g22470
OsAffx.17850.1.S1_at--575--5311Chr09:13565602..13565626 (25 bp)
GAAGGGCTACGGAGCATCGGTCAAT
LOC_Os09g22470
OsAffx.17850.1.S1_at--467--5891Chr09:13565705..13565729 (25 bp)
GAGCGTGGAACTACTGCTGCAATCA
LOC_Os09g22470
Target Sequence 
GGTAAATGATACCTTGCTCCTCTACAGCATATCTAGCCAACAATTGCTAGCCAACAGCGGACTAGATGATTTGAAAGACC
TCTTTTACTGGATAACACCGCAAGTGGGGGGCAAGTTCTGCACGGCGTTTTTTAGCACTGTCGTGACATTAGATTTCTCC
CCGAATCCAACATTTGATATTGTTGCTGTTACACTGGTACAAAATTCAGTGTACAACTTTAGGGAAATCTACTTGTTAGA
ATCAAGAGGGGAGTTGTTCTGCTTGTACTTCTACCCTCCAGGAGCATGTTCTAATAAAACAGTGGAGATTTCTGTTTACA
AGCTGGACATACCAACGACAGCTTGGGTGAAGGTGGACACACTTGGTGATAGGGCGTTTATTATCAATACCAGGAAGGGC
TACGGAGCATCGGTCAATGCAAAAGAAGCTTGCCTACAGGAAAACTGCATTTATTTTTCGAGGCACAGAGACAAAGGACT
ATATGTTTACAGTATGGAGCGTGGAACTACTGCTGCAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis