Browse Element(s) Details


OsAffx.4565.1.S1_at

Description tigr:9633.m03721
TID=OsAffx.4565.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3994011/11Zinc finger, C3HC4 type family protein
LOC_Os09g225101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39910OsAffx.27245.1.S1_at7/115+23367994..23369401hypothetical protein
LOC_Os05g39920NANA5+23371317..23375666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39930Os.6671.1.S1_a_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39930Os.6671.2.S1_x_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39940OsAffx.4565.1.S1_at11/115+23390051..23390494Zinc finger, C3HC4 type family protein
LOC_Os05g39950NANA5+23394147..23395498uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g39960Os.12561.1.S1_at11/115+23399874..2340257140S ribosomal protein S26, putative, expressed
LOC_Os05g39970OsAffx.27246.1.S1_at11/115+23403212..23404002hypothetical protein
LOC_Os05g39970OsAffx.7080.1.S1_x_at1/115+23403212..23404002hypothetical protein
LOC_Os05g39980Os.57119.1.S1_at10/115+23404651..23408387expressed protein
LOC_Os05g39980Os.32889.2.S1_at1/115+23404651..23408387expressed protein
LOC_Os05g39990Os.50825.1.S1_s_at11/115+23412448..23414366Alpha-expansin 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4565.1.S1_at--786--8551Chr05:23390432..23390456 (25 bp)
TGGAGTCGCGATGTTGGTCCTCCCT
LOC_Os05g39940
OsAffx.4565.1.S1_at--172--8611Chr05:23390418..23390442 (25 bp)
TGGTCCTCCCTTGGTGGTGCGCCGT
LOC_Os05g39940
OsAffx.4565.1.S1_at--326--8371Chr05:23390365..23390389 (25 bp)
GGCGTCGTCGATGACTCTTACGACT
LOC_Os05g39940
OsAffx.4565.1.S1_at--584--6311Chr05:23390356..23390380 (25 bp)
GATGACTCTTACGACTCTGATTCCT
LOC_Os05g39940
OsAffx.4565.1.S1_at--226--10471Chr05:23390348..23390372 (25 bp)
TTACGACTCTGATTCCTGGTACACA
LOC_Os05g39940
OsAffx.4565.1.S1_at--228--4251Chr05:23390334..23390358 (25 bp)
CCTGGTACACAGATTATAGCGACGA
LOC_Os05g39940
OsAffx.4565.1.S1_at--502--9851Chr05:23390329..23390353 (25 bp)
TACACAGATTATAGCGACGAAGACG
LOC_Os05g39940
OsAffx.4565.1.S1_at--197--10851Chr05:23390295..23390319 (25 bp)
TTGGCGGCGACAATAAGGACGGTTT
LOC_Os05g39940
OsAffx.4565.1.S1_at--557--931Chr05:23390280..23390304 (25 bp)
AGGACGGTTTAACGCCAGACCAGCT
LOC_Os05g39940
OsAffx.4565.1.S1_at--228--8491Chr05:23390116..23390140 (25 bp)
TGGCTGACGACGAGACGCACCTGCC
LOC_Os05g39940
OsAffx.4565.1.S1_at--109--7312Chr09:13579319..13579457 (24 bp)
GTGCTGCCGTGAGCTCGTCCTGGTC
LOC_Os09g22510
Target Sequence 
TGGAGTCGCGATGTTGGTCCTCCCTTGGTGGTGCGCCGTCGGCGAGGACGACGACACCTACATCGACGGCGTCGTCGATG
ACTCTTACGACTCTGATTCCTGGTACACAGATTATAGCGACGAAGACGACGACGACGTTGGCGGCGACAATAAGGACGGT
TTAACGCCAGACCAGCTGCGGCGGCTGCCGTGGTTCGCCTACTGCGGCGGCGGCGGCAGGAGCTGCAGCATATGCCTGGA
GGAGATGCGCGACGGCGAGAGGTGCCGGCGGCCGGGTCGCTGCCGGCACGCATTCCACGCCGCCTGCGTCGACGAGTGGC
TGACGACGAGACGCACCTGCCCGTGCTGCCGTGAGCTCGTCCTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis