Browse Element(s) Details


Os.50825.1.S1_s_at

Description gb:U85246.1
DB_XREF= gi:1815680
GEN=Os-EXP4
TID=Os.50825.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50825 (NCBI UniGene Cluster)
DEF=Oryza sativa expansin (Os-EXP4) mRNA, complete cds.
PROD=expansin
FL= gb:AK100179.1 gb:U85246.1 gb:AK058811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3999011/11Alpha-expansin 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39940OsAffx.4565.1.S1_at11/115+23390051..23390494Zinc finger, C3HC4 type family protein
LOC_Os05g39950NANA5+23394147..23395498uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g39960Os.12561.1.S1_at11/115+23399874..2340257140S ribosomal protein S26, putative, expressed
LOC_Os05g39970OsAffx.27246.1.S1_at11/115+23403212..23404002hypothetical protein
LOC_Os05g39970OsAffx.7080.1.S1_x_at1/115+23403212..23404002hypothetical protein
LOC_Os05g39980Os.57119.1.S1_at10/115+23404651..23408387expressed protein
LOC_Os05g39980Os.32889.2.S1_at1/115+23404651..23408387expressed protein
LOC_Os05g39990Os.50825.1.S1_s_at11/115+23412448..23414366Alpha-expansin 1 precursor, putative, expressed
LOC_Os05g40000Os.56291.1.S1_at11/115+23419461..23420987expressed protein
LOC_Os05g40000OsAffx.29576.3.S1_x_at11/115+23419461..23420987expressed protein
LOC_Os05g40010OsAffx.27248.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010OsAffx.27248.1.S1_x_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010Os.16271.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40020Os.57149.1.S1_at11/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40020Os.35921.2.S1_x_at1/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40030NANA5+23428589..23429032hypothetical protein
LOC_Os05g40040OsAffx.15034.1.S1_at11/115+23431884..23436764expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005199molecular_functionstructural constituent of cell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50825.1.S1_s_at--57--9511Chr05:23412911..23412935 (25 bp)
TCTCCGACACCCACATATAATAGCA
LOC_Os05g39990
Os.50825.1.S1_s_at--18--371Chr05:23412895..23412919 (25 bp)
ATAATAGCACGGTGTCCTTCTTCGT
LOC_Os05g39990
Os.50825.1.S1_s_at--472--7151Chr05:23412854..23412878 (25 bp)
GTCTTTCTTCCTTGAGAGATTATTT
LOC_Os05g39990
Os.50825.1.S1_s_at--1139--2351Chr05:23412808..23412832 (25 bp)
AAAGCCTCTTCGTTATAGTGGAGAA
LOC_Os05g39990
Os.50825.1.S1_s_at--1158--10391Chr05:23412779..23412803 (25 bp)
TTTTGGGCTATGCTGAGGCTGCTAA
LOC_Os05g39990
Os.50825.1.S1_s_at--460--10431Chr05:23412754..23412778 (25 bp)
TTAGCACCCGCTTAGACGTTTTCCT
LOC_Os05g39990
Os.50825.1.S1_s_at--484--10011Chr05:23412742..23412766 (25 bp)
TAGACGTTTTCCTTCTCTGGACTTC
LOC_Os05g39990
Os.50825.1.S1_s_at--483--3911Chr05:23412726..23412750 (25 bp)
CTGGACTTCGTCCAATAATGACTGG
LOC_Os05g39990
Os.50825.1.S1_s_at--350--3091Chr05:23412713..23412737 (25 bp)
AATAATGACTGGACCGGTCCACCAT
LOC_Os05g39990
Os.50825.1.S1_s_at--1128--8871Chr05:23412593..23412617 (25 bp)
TGAGCGTTTTCTTGTACCGGAGTGA
LOC_Os05g39990
Os.50825.1.S1_s_at--31--4191Chr05:23412545..23412569 (25 bp)
CCGCGAGGCCGTGTTTTATTTATCA
LOC_Os05g39990
Target Sequence 
TCTCCGACACCCACATATAATAGCACGGTGTCCTTCTTCGTCTTCGTTCTCGTCGTCGTCTTTCTTCCTTGAGAGATTAT
TTATTTTGAGCAAGAGAGAAAGAAAAGCCTCTTCGTTATAGTGGAGAAGAGGTTTTGGGCTATGCTGAGGCTGCTAATTA
GCACCCGCTTAGACGTTTTCCTTCTCTGGACTTCGTCCAATAATGACTGGACCGGTCCACCATCATCAAGTGTAGTGGTA
GTAGTAAAGGGGAGTACTAAGCTTAGTACTACTTGAAGAAAAAATCAATAATAATTGTATTGATTAAATTTCTACTTTTG
AGCGTTTTCTTGTACCGGAGTGATGGCCTTGCAACGGAATTAAAAACCGCGAGGCCGTGTTTTATTTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50825.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis