Browse Element(s) Details


OsAffx.15034.1.S1_at

Description tigr:9633.m03734
TID=OsAffx.15034.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4004011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39980Os.57119.1.S1_at10/115+23404651..23408387expressed protein
LOC_Os05g39980Os.32889.2.S1_at1/115+23404651..23408387expressed protein
LOC_Os05g39990Os.50825.1.S1_s_at11/115+23412448..23414366Alpha-expansin 1 precursor, putative, expressed
LOC_Os05g40000Os.56291.1.S1_at11/115+23419461..23420987expressed protein
LOC_Os05g40000OsAffx.29576.3.S1_x_at11/115+23419461..23420987expressed protein
LOC_Os05g40010OsAffx.27248.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010OsAffx.27248.1.S1_x_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010Os.16271.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40020Os.57149.1.S1_at11/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40020Os.35921.2.S1_x_at1/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40030NANA5+23428589..23429032hypothetical protein
LOC_Os05g40040OsAffx.15034.1.S1_at11/115+23431884..23436764expressed protein
LOC_Os05g40050OsAffx.27250.2.S1_at11/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40050OsAffx.22147.1.S1_x_at1/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40060OsAffx.4567.2.S1_at11/115+23446217..23447293WRKY DNA binding domain containing protein, expressed
LOC_Os05g40070OsAffx.15035.1.S1_at11/115+23453168..23455737WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15034.1.S1_at--899--5291Chr05:23436196..23436220 (25 bp)
GAAGGCGTGCTAGTGGAGTCCCATA
LOC_Os05g40040
OsAffx.15034.1.S1_at--545--7511Chr05:23436208..23436232 (25 bp)
GTGGAGTCCCATATCAGCAACTTGA
LOC_Os05g40040
OsAffx.15034.1.S1_at--943--5551Chr05:23436356..23436380 (25 bp)
GAAACCATCTGGAAGTATCTCTGCA
LOC_Os05g40040
OsAffx.15034.1.S1_at--12--2311Chr05:23436380..23436404 (25 bp)
AAATGGCCTTTCTTTGAGACCTCAG
LOC_Os05g40040
OsAffx.15034.1.S1_at--1133--5991Chr05:23436395..23436419 (25 bp)
GAGACCTCAGACCAATAGCAAAGAT
LOC_Os05g40040
OsAffx.15034.1.S1_at--210--8971Chr05:23436522..23436546 (25 bp)
TGACAAGGTCACTCGCATTCTGGAA
LOC_Os05g40040
OsAffx.15034.1.S1_at--164--6491Chr05:23436547..23436571 (25 bp)
GATAGGTTTGTCTGTCTTCATACGG
LOC_Os05g40040
OsAffx.15034.1.S1_at--841--7171Chr05:23436556..23436580 (25 bp)
GTCTGTCTTCATACGGTTTGTACCA
LOC_Os05g40040
OsAffx.15034.1.S1_at--1131--6971Chr05:23436575..23436599 (25 bp)
GTACCATATTGTTCCACTACTACTT
LOC_Os05g40040
OsAffx.15034.1.S1_at--99--2031Chr05:23436593..23436617 (25 bp)
ACTACTTTTTGTTTCTAGGCTGATA
LOC_Os05g40040
OsAffx.15034.1.S1_at--171--2151Chr05:23436663..23436687 (25 bp)
ACAGCACGGTTTCTTAGTTACATGA
LOC_Os05g40040
Target Sequence 
GAAGGCGTGCTAGTGGAGTCCCATATCAGCAACTTGAGATGGGAGACCAAGCCCCCAACTCATCAGGCGTGGAAAACACT
ACAAGCACTGTGGATGGTTGGGAAGATGGCTGGGATGATGACTGGGATGATGAAGAAGCGGCAGCAAAACCTTCAGATAA
GAAACCATCTGGAAGTATCTCTGCAAATGGCCTTTCTTTGAGACCTCAGACCAATAGCAAAGATGGCTGGGATGTAGATT
GGGATGACTAAGCTGCATAGAATGTTGAGAAATGTGATCTGGACGAGCTGCAGAAAAAGCACAGACAAACTGATAGCATC
TGTGATTGACAAGGTCACTCGCATTCTGGAAGATAGGTTTGTCTGTCTTCATACGGTTTGTACCATATTGTTCCACTACT
ACTTTTTGTTTCTAGGCTGATACACAAACTGTTAGTGGGTACAAATTGTAATTTCGGTAGTAACACAACAGCACGGTTTC
TTAGTTACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis