Browse Element(s) Details


OsAffx.29576.3.S1_x_at

Description tigr:9633.m03730
TID=OsAffx.29576.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4000011/11expressed protein
LOC_Os10g317601/11hypothetical protein
LOC_Os01g410501/11sulfate transporter 3.5, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39950NANA5+23394147..23395498uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g39960Os.12561.1.S1_at11/115+23399874..2340257140S ribosomal protein S26, putative, expressed
LOC_Os05g39970OsAffx.27246.1.S1_at11/115+23403212..23404002hypothetical protein
LOC_Os05g39970OsAffx.7080.1.S1_x_at1/115+23403212..23404002hypothetical protein
LOC_Os05g39980Os.57119.1.S1_at10/115+23404651..23408387expressed protein
LOC_Os05g39980Os.32889.2.S1_at1/115+23404651..23408387expressed protein
LOC_Os05g39990Os.50825.1.S1_s_at11/115+23412448..23414366Alpha-expansin 1 precursor, putative, expressed
LOC_Os05g40000Os.56291.1.S1_at11/115+23419461..23420987expressed protein
LOC_Os05g40000OsAffx.29576.3.S1_x_at11/115+23419461..23420987expressed protein
LOC_Os05g40010OsAffx.27248.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010OsAffx.27248.1.S1_x_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010Os.16271.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40020Os.57149.1.S1_at11/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40020Os.35921.2.S1_x_at1/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40030NANA5+23428589..23429032hypothetical protein
LOC_Os05g40040OsAffx.15034.1.S1_at11/115+23431884..23436764expressed protein
LOC_Os05g40050OsAffx.27250.2.S1_at11/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40050OsAffx.22147.1.S1_x_at1/115+23440881..23444049Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29576.3.S1_x_at--229--5191Chr05:23420220..23420244 (25 bp)
GCAAGGCTGAGGATCCTGATGGATT
LOC_Os05g40000
OsAffx.29576.3.S1_x_at--428--831Chr05:23420202..23420226 (25 bp)
ATGGATTTCATGTCGCGGTCAGCAA
LOC_Os05g40000
OsAffx.29576.3.S1_x_at--842--4671Chr05:23420188..23420212 (25 bp)
GCGGTCAGCAATCACCGGGTTCATG
LOC_Os05g40000
OsAffx.29576.3.S1_x_at--671--9732Chr01:23574983..23575007 (25 bp)
TCAAGGGCTTCCTCGGCATGACGCA
LOC_Os01g41050
OsAffx.29576.3.S1_x_at--966--5792Chr10:16319615..16320045 (25 bp)
GACGCACTTCACCACCAGGAAGTCT
LOC_Os10g31760
OsAffx.29576.3.S1_x_at--1104--1692Chr07:3031591..3031613 (22 bp)
ACCAGGAAGTCTCCACGTTCGTCTC
NONE
OsAffx.29576.3.S1_x_at--44--5151Chr05:23420017..23420041 (25 bp)
GCAACGTCGGGCACGCCATTGCCGA
LOC_Os05g40000
OsAffx.29576.3.S1_x_at--14--1331Chr05:23419796..23419820 (25 bp)
AGAGGATGATGATGTGGCCACGCTA
LOC_Os05g40000
OsAffx.29576.3.S1_x_at--880--6291Chr05:23419789..23419813 (25 bp)
GATGATGTGGCCACGCTAACATGTG
LOC_Os05g40000
OsAffx.29576.3.S1_x_at--677--7495Chr01:33718235..33718256 (22 bp)
GTGGGTCTCACGTTGACTCAGCTGA
NONE
OsAffx.29576.3.S1_x_at--892--6651Chr05:23419745..23419769 (25 bp)
GTTGACTCAGCTGACACGTAGGATA
LOC_Os05g40000
Target Sequence 
GCAAGGCTGAGGATCCTGATGGATTTCATGTCGCGGTCAGCAATCACCGGGTTCATGGGTGGCACGGCGGTCGTGATCGT
GCTGCAGCAGCTCAAGGGCTTCCTCGGCATGACGCACTTCACCACCAGGAAGTCTCCACGTTCGTCTCCGCGTTCGTCGT
CGGGGCCGTCGCGCTCATCGCCGCGGCGTTCGCCATCCCTCCTGCAACGTCGGGCACGCCATTGCCGAGCGCGCGGAGCG
TGACGGCGGCCATAGACGGGGAGAGGCGGAGGCGGCCCGCGAGGCGGGAAATCGCTGGGGGAGAAGTGGGACCCGCGGCG
GCGGCTAGGACGCGGAAGTGGAGGAGGAGCGCGAGCACCGGGAGGGAGGCGCGGCGCAGCGTGGAGAGAGGAGAAAAGCG
TGCGAGAGAGAGGGGAGGGGAAAGAGAGGATGATGATGTGGCCACGCTAACATGTGGGGCCCACGTGGGTCTCACGTTGA
CTCAGCTGACACGTAGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29576.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis