Browse Element(s) Details


Os.12561.1.S1_at

Description gb:AK121584.1
DB_XREF= gi:37991207
TID=Os.12561.1
CNT=79
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037F24, full insert sequence.
FL= gb:AK119683.1 gb:AK098982.1 gb:AK061933.1 gb:AK121584.1 gb:AK119693.1 gb:AK119797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3996011/1140S ribosomal protein S26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39920NANA5+23371317..23375666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39930Os.6671.1.S1_a_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39930Os.6671.2.S1_x_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39940OsAffx.4565.1.S1_at11/115+23390051..23390494Zinc finger, C3HC4 type family protein
LOC_Os05g39950NANA5+23394147..23395498uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g39960Os.12561.1.S1_at11/115+23399874..2340257140S ribosomal protein S26, putative, expressed
LOC_Os05g39970OsAffx.27246.1.S1_at11/115+23403212..23404002hypothetical protein
LOC_Os05g39970OsAffx.7080.1.S1_x_at1/115+23403212..23404002hypothetical protein
LOC_Os05g39980Os.57119.1.S1_at10/115+23404651..23408387expressed protein
LOC_Os05g39980Os.32889.2.S1_at1/115+23404651..23408387expressed protein
LOC_Os05g39990Os.50825.1.S1_s_at11/115+23412448..23414366Alpha-expansin 1 precursor, putative, expressed
LOC_Os05g40000Os.56291.1.S1_at11/115+23419461..23420987expressed protein
LOC_Os05g40000OsAffx.29576.3.S1_x_at11/115+23419461..23420987expressed protein
LOC_Os05g40010OsAffx.27248.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010OsAffx.27248.1.S1_x_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010Os.16271.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40020Os.57149.1.S1_at11/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40020Os.35921.2.S1_x_at1/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12561.1.S1_at--499--8011Chr05:23400433..23400457 (25 bp)
GGAGGATAGGCCTACTGGACCTCGC
LOC_Os05g39960
Os.12561.1.S1_at--1107--9751Chr05:23400352..23400376 (25 bp)
TAATGTTGCTCGCACCTAAACAGCC
LOC_Os05g39960
Os.12561.1.S1_at--760--3731Chr05:23400337..23400361 (25 bp)
CTAAACAGCCGTAGTCGCTCCTTTG
LOC_Os05g39960
Os.12561.1.S1_at--452--2031Chr05:23400233..23400257 (25 bp)
ACTAGCTTGTACTTTGCGATTGGCA
LOC_Os05g39960
Os.12561.1.S1_at--221--7591Chr05:23400085..23400109 (25 bp)
GGGCTTTCATTATTACTATTCGAGT
LOC_Os05g39960
Os.12561.1.S1_at--1088--1031Chr05:23400041..23400065 (25 bp)
AGGTGCCTGGCCACTGTGCAGTGAA
LOC_Os05g39960
Os.12561.1.S1_at--671--1131Chr05:23399989..23400013 (25 bp)
AGTGCGACATTGTTTCAATTGGCAG
LOC_Os05g39960
Os.12561.1.S1_at--838--3171Chr05:23399974..23399998 (25 bp)
CAATTGGCAGTTGCTCGGTTCGTAT
LOC_Os05g39960
Os.12561.1.S1_at--976--4791Chr05:23399962..23399986 (25 bp)
GCTCGGTTCGTATCTGTTATTCTGT
LOC_Os05g39960
Os.12561.1.S1_at--9--10391Chr05:23399935..23399959 (25 bp)
TTTTCTACACAACCCCTTAGCATGA
LOC_Os05g39960
Os.12561.1.S1_at--239--6431Chr05:23399912..23399936 (25 bp)
GATCAACTCAGGCTTGTAAACCGGA
LOC_Os05g39960
Target Sequence 
GGAGGATAGGCCTACTGGACCTCGCCCTGGTGGTGCTGGTGGACCTGGTGCCCCTGCTGCTGCTGGACCTGGTGGCCCCC
CTAATGTTGCTCGCACCTAAACAGCCGTAGTCGCTCCTTTGNTACTCTATATCATATCCTGTTAATGGCNGCNCATGGAT
ATCATCGTTATGGTCTTTCATGAGGTCAAAGTCTTTCTTGGAACTAGCTTGTACTTTGCGATTGGCAGTGTGACAATGGA
AGTCTGAATTTTTGCCTGAGTTGTTTATCTATTTTAGACCGCTATCGTTGCTTTTTTTGCTAGTTATGCTTTTTTTTTNC
AAAATCTGAAGCTATTAATATGCTCATTTCTTGGGCTTTCATTATTACTATTCGAGTTGAAAACCTGTGATATGCAAGGT
GCCTGGCCACTGTGCAGTGAAAGCTGAATTGATTTTGAAATCTTGNCCAGTGCGACATTGTTTCAATTGGCAGTTGCTCG
GTTCGTATCTGTTATTCTGTNGTTTTCTACACAACCCCTTAGCATGATCAACTCAGGCTTGTAAACCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis