Browse Element(s) Details


Os.6671.2.S1_x_at

Description gb:AK099529.1
DB_XREF= gi:32984738
TID=Os.6671.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23275 arm repeat protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031J19, full insert sequence.
FL= gb:AK099529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3993011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39890NANA5+23354608..23355090NAF domain containing protein
LOC_Os05g39900OsAffx.15033.2.S1_at11/115+23358227..23359325Protein kinase domain containing protein
LOC_Os05g39910OsAffx.27245.1.S1_at7/115+23367994..23369401hypothetical protein
LOC_Os05g39920NANA5+23371317..23375666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39930Os.6671.1.S1_a_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39930Os.6671.2.S1_x_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39940OsAffx.4565.1.S1_at11/115+23390051..23390494Zinc finger, C3HC4 type family protein
LOC_Os05g39950NANA5+23394147..23395498uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g39960Os.12561.1.S1_at11/115+23399874..2340257140S ribosomal protein S26, putative, expressed
LOC_Os05g39970OsAffx.27246.1.S1_at11/115+23403212..23404002hypothetical protein
LOC_Os05g39970OsAffx.7080.1.S1_x_at1/115+23403212..23404002hypothetical protein
LOC_Os05g39980Os.57119.1.S1_at10/115+23404651..23408387expressed protein
LOC_Os05g39980Os.32889.2.S1_at1/115+23404651..23408387expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6671.2.S1_x_at--583--9411Chr05:23380143..23380167 (25 bp)
TCGTCGTCTTCTTCGTATTCCTCGT
LOC_Os05g39930
Os.6671.2.S1_x_at--32--5771Chr05:23382099..23382123 (25 bp)
GACGTCACGACGACGGCCATTACAG
LOC_Os05g39930
Os.6671.2.S1_x_at--162--1951Chr05:23382111..23382135 (25 bp)
ACGGCCATTACAGCGTCGTGAAATT
LOC_Os05g39930
Os.6671.2.S1_x_at--469--2151Chr05:23382120..23382144 (25 bp)
ACAGCGTCGTGAAATTCCACCACGG
LOC_Os05g39930
Os.6671.2.S1_x_at--513--9211Chr05:23382135..23382159 (25 bp)
TCCACCACGGCCACATTGATTAATT
LOC_Os05g39930
Os.6671.2.S1_x_at--630--10651Chr05:23382189..23382213 (25 bp)
TTCCCACGCACAACGAATGCTTGTA
LOC_Os05g39930
Os.6671.2.S1_x_at--398--51Chr05:23382225..23382249 (25 bp)
ATTGTTTCTTGCCTTCAAGGCCTTC
LOC_Os05g39930
Os.6671.2.S1_x_at--91--2951Chr05:23382241..23382265 (25 bp)
AAGGCCTTCACGATTCTTTGGTTCA
LOC_Os05g39930
Os.6671.2.S1_x_at--161--1891Chr05:23382250..23382274 (25 bp)
ACGATTCTTTGGTTCATGGGACCAG
LOC_Os05g39930
Os.6671.2.S1_x_at--737--3491Chr05:23382264..23382288 (25 bp)
CATGGGACCAGTTTGAGTAATTGAT
LOC_Os05g39930
Os.6671.2.S1_x_at--321--6471Chr05:23382286..23382309 (24 bp)
GATAAACTGCACATACAATTATACG
LOC_Os05g39930
Target Sequence 
TCGTCGTCTTCTTCGTATTCCTCGTCGGCGTCCGACGGGGAGATCCTCCGATCGCTGCACCGCCTGGCGAGGGATCTGGC
TGCGGCGCGGTGGTGCGCCTCGTGGCCGAGCTGCGGCGCGGCACGGAGTGGTCAAGGGAGTGCGCGGCCGCCGCGCTGGT
GCTGCTCTGCCGCCGCGTGGGCGCCGCCGTGGTGGCGCAGGTGATGTCGGTCTCCGGCGTGGAGTGGGCGATATGGGAGC
TGATGGCCACCGGCACGGAGCGCGCGCGGCGCAAGGCCGCGTCGCTCGGCAGGGCATGCCGGCGTTGGGCCGCGGCGGAG
CAAACCGCGGAGTACCCCGCCACCTCCGACGTCACGACGACGGCCATTACAGCGTCGTGAAATTCCACCACGGCCACATT
GATTAATTCATAGGAGCAGATAAAATTTCGATTTTTTTTCCCACGCACAACGAATGCTTGTACAAAAAAAAAAATTGTTT
CTTGCCTTCAAGGCCTTCACGATTCTTTGGTTCATGGGACCAGTTTGAGTAATTGATAAACTGCACATACAATTATACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6671.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis