Browse Element(s) Details


OsAffx.15033.2.S1_at

Description tigr:9633.m03716
TID=OsAffx.15033.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Serinethreonine Kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3990011/11Protein kinase domain containing protein
LOC_Os05g398701/11CBL-interacting serine/threonine-protein kinase 15, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39840Os.51844.1.S1_at11/115+23333209..23336128expressed protein
LOC_Os05g39850OsAffx.27244.1.S1_x_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39850Os.23359.1.S1_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39860OsAffx.15031.1.S1_at11/115+23343439..23344701expressed protein
LOC_Os05g39870OsAffx.15033.1.S1_at10/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39870OsAffx.15033.2.S1_at1/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39880Os.46919.1.S1_at10/115+23350940..23353272expressed protein
LOC_Os05g39890NANA5+23354608..23355090NAF domain containing protein
LOC_Os05g39900OsAffx.15033.2.S1_at11/115+23358227..23359325Protein kinase domain containing protein
LOC_Os05g39910OsAffx.27245.1.S1_at7/115+23367994..23369401hypothetical protein
LOC_Os05g39920NANA5+23371317..23375666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39930Os.6671.1.S1_a_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39930Os.6671.2.S1_x_at11/115+23380031..23382327U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0005829cellular_componentcytosol
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15033.2.S1_at--721--5951Chr05:23358469..23358493 (25 bp)
GAGCAAGATTTACTTTTCTTTGGAG
LOC_Os05g39900
OsAffx.15033.2.S1_at--831--4391Chr05:23358497..23358521 (25 bp)
GCCAAGAGTGGCAAGCTTTTCCACA
LOC_Os05g39900
OsAffx.15033.2.S1_at--531--9872Chr05:23358870..23358894 (25 bp)
TACAGATGCCCTCGTCATTTTTCGA
LOC_Os05g39900
OsAffx.15033.2.S1_at--340--4191Chr05:23358878..23358902 (25 bp)
CCCTCGTCATTTTTCGACTGATTTG
LOC_Os05g39900
OsAffx.15033.2.S1_at--453--3532Chr05:23358992..23359016 (25 bp)
CATCGCCATATCTGCACTGAACAGC
LOC_Os05g39900
OsAffx.15033.2.S1_at--30--2471Chr05:23359064..23359088 (25 bp)
AACAACCCGCATTAGTTCTGAGAGA
LOC_Os05g39900
OsAffx.15033.2.S1_at--282--3732Chr05:23359144..23359168 (25 bp)
CTACTGGATTCGATCTATCAGGTTT
LOC_Os05g39900
OsAffx.15033.2.S1_at--206--6011Chr05:23359192..23359216 (25 bp)
GAGAGGCACGGTTTTCATCCAGAAA
LOC_Os05g39900
OsAffx.15033.2.S1_at--493--6811Chr05:23359202..23359226 (25 bp)
GTTTTCATCCAGAAAGCTAGCTGCA
LOC_Os05g39900
OsAffx.15033.2.S1_at--1162--4851Chr05:23359217..23359241 (25 bp)
GCTAGCTGCAGCTGTACTTGTGAAG
LOC_Os05g39900
OsAffx.15033.2.S1_at--440--5431Chr05:23359248..23359272 (25 bp)
GAACCAGCCAAATCCTTGAATCTTA
LOC_Os05g39900
Target Sequence 
GAGCAAGATTTACTTTTCTTTGGAGTATGCCAAGAGTGGCAAGCTTTTCCACAAAATGGCTAGGGCAAAGCTCAATGAGG
AGTCGGCGAGAAAGAAGATCGCAAAGGCTGAGTACAGATGCCCTCGTCATTTTTCGACTGATTTGAAGGAGCTCCTTTAT
GGAATCCTTGATCCTGATCCTAGTACTAGGATGTCTATCTTAAGGATAAAGATAAGTGCTTGGTACAAGAAACCCATCGC
CATATCTGCACTGAACAGCGAAACAAGAAAGAAGAGTTGTATAAGTGAGGCTCCTTTCTCTGGCCCAACAACCCGCATTA
GTTCTGAGAGAAATCAAGAGCCACCAAACCTGCACAACTTGAATGCATTTGACATCATTTCTCTCTCTACTGGATTCGAT
CTATCAGGTTTATTTGGTGAAAGGTATGGCCGGAGAGAGGCACGGTTTTCATCCAGAAAGCTAGCTGCAGCTGTACTTGT
GAAGCTGAAGGAACCAGCCAAATCCTTGAATCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15033.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis