Browse Element(s) Details


OsAffx.15031.1.S1_at

Description tigr:9633.m03712
TID=OsAffx.15031.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3986011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39830Os.53607.1.S1_at10/115+23324798..23325874expressed protein
LOC_Os05g39840Os.51844.1.S1_at11/115+23333209..23336128expressed protein
LOC_Os05g39850OsAffx.27244.1.S1_x_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39850Os.23359.1.S1_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39860OsAffx.15031.1.S1_at11/115+23343439..23344701expressed protein
LOC_Os05g39870OsAffx.15033.1.S1_at10/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39870OsAffx.15033.2.S1_at1/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39880Os.46919.1.S1_at10/115+23350940..23353272expressed protein
LOC_Os05g39890NANA5+23354608..23355090NAF domain containing protein
LOC_Os05g39900OsAffx.15033.2.S1_at11/115+23358227..23359325Protein kinase domain containing protein
LOC_Os05g39910OsAffx.27245.1.S1_at7/115+23367994..23369401hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15031.1.S1_at--689--9331Chr05:23343887..23343911 (25 bp)
TCGCCGTCGAGTTCTTGCAGTGGTG
LOC_Os05g39860
OsAffx.15031.1.S1_at--566--10731Chr05:23343873..23343897 (25 bp)
TTGCAGTGGTGGTTCATGCTCTCCC
LOC_Os05g39860
OsAffx.15031.1.S1_at--541--4431Chr05:23343813..23343837 (25 bp)
GCCATCATGGCGTGGACGACCGAAG
LOC_Os05g39860
OsAffx.15031.1.S1_at--635--5851Chr05:23343691..23343715 (25 bp)
GACCACGAGCTTCACGCTCATGGCG
LOC_Os05g39860
OsAffx.15031.1.S1_at--1109--4891Chr05:23343683..23343707 (25 bp)
GCTTCACGCTCATGGCGGGCACGTA
LOC_Os05g39860
OsAffx.15031.1.S1_at--28--1891Chr05:23343663..23343687 (25 bp)
ACGTACGCGGTGTACCTAGGGCAGA
LOC_Os05g39860
OsAffx.15031.1.S1_at--333--1731Chr05:23343650..23343674 (25 bp)
ACCTAGGGCAGAAGAAGTACGACGT
LOC_Os05g39860
OsAffx.15031.1.S1_at--419--1851Chr05:23343632..23343656 (25 bp)
ACGACGTGTACCTGAGGGCGGCCAT
LOC_Os05g39860
OsAffx.15031.1.S1_at--1042--4251Chr05:23343491..23343515 (25 bp)
CCGGCCTCGCGTTGGTGATCGCCAT
LOC_Os05g39860
OsAffx.15031.1.S1_at--675--8851Chr05:23343476..23343500 (25 bp)
TGATCGCCATCCCTTTGTTTGTCAA
LOC_Os05g39860
OsAffx.15031.1.S1_at--210--4171Chr05:23343472..23343496 (25 bp)
CGCCATCCCTTTGTTTGTCAAAATC
LOC_Os05g39860
Target Sequence 
TCGCCGTCGAGTTCTTGCAGTGGTGGTTCATGCTCTCCCTCCTCCCGGAGGCCATCGCCGTCGCGCTCAACGTCGCCATC
ATGGCGTGGACGACCGAAGGCGGCGCAAACGTCGTCGACGGCAGCGTTGAGGCGGCGGCGGCAGCGGCATCGGCGGGGGC
GAGAGAGAGGAGGGCGAAGGGGTTCAGGGCCGTGGCGACCACGAGCTTCACGCTCATGGCGGGCACGTACGCGGTGTACC
TAGGGCAGAAGAAGTACGACGTGTACCTGAGGGCGGCCATGCTGGTGATGCTGACCGCCGTGGTGTCGAGCCTGAGGCAG
ATGCTGCGGCCGTTCGGGCGGTCGAGGGCGAGGGGTTGGTGGGCGGTGGCCGCCGGCGCGGTGTCGCTCGTCTTCCCCGG
CCTCGCGTTGGTGATCGCCATCCCTTTGTTTGTCAAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis