Browse Element(s) Details


Os.53607.1.S1_at

Description gb:AK073548.1
DB_XREF= gi:32983571
TID=Os.53607.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044C05, full insert sequence.
FL= gb:AK073548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3983010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39800Os.18913.1.S1_x_at11/115+23303526..23306003Nodulin-like family protein, expressed
LOC_Os05g39800Os.18913.2.S1_at6/115+23303526..23306003Nodulin-like family protein, expressed
LOC_Os05g39810NANA5+23306628..23309946retrotransposon protein, putative, unclassified
LOC_Os05g39830Os.53607.1.S1_at10/115+23324798..23325874expressed protein
LOC_Os05g39840Os.51844.1.S1_at11/115+23333209..23336128expressed protein
LOC_Os05g39850OsAffx.27244.1.S1_x_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39850Os.23359.1.S1_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39860OsAffx.15031.1.S1_at11/115+23343439..23344701expressed protein
LOC_Os05g39870OsAffx.15033.1.S1_at10/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39870OsAffx.15033.2.S1_at1/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53607.1.S1_at--47--1671NONE
AGCCCATGGATGGTGCAGCTCTGCG
NONE
Os.53607.1.S1_at--1026--1531Chr05:23325128..23325152 (25 bp)
AGCATCAGGAGGGTCGACACCGGCA
LOC_Os05g39830
Os.53607.1.S1_at--243--7171Chr05:23325045..23325069 (25 bp)
GTCGGCGTCGGTAGTAAGTGTAACA
LOC_Os05g39830
Os.53607.1.S1_at--879--1411Chr05:23325015..23325039 (25 bp)
AGAAATGCACGTACACCGTCGTCCA
LOC_Os05g39830
Os.53607.1.S1_at--407--7011Chr05:23324979..23325003 (25 bp)
GTACTCCATCATGCGTCACATGCAG
LOC_Os05g39830
Os.53607.1.S1_at--928--2091Chr05:23324962..23324986 (25 bp)
ACATGCAGTGGTTGGGCCTCCTTAA
LOC_Os05g39830
Os.53607.1.S1_at--87--7451Chr05:23324914..23324938 (25 bp)
GTGTACACGACATCGATCGTTCCTG
LOC_Os05g39830
Os.53607.1.S1_at--114--6711Chr05:23324896..23324920 (25 bp)
GTTCCTGTCACGTATTTGTGTGCAT
LOC_Os05g39830
Os.53607.1.S1_at--719--7071Chr05:23324869..23324893 (25 bp)
GTAATTAGCTAGCTGTTCGATCCAG
LOC_Os05g39830
Os.53607.1.S1_at--808--8791Chr05:23324856..23324880 (25 bp)
TGTTCGATCCAGTGTCTGCTGCTGT
LOC_Os05g39830
Os.53607.1.S1_at--802--3831Chr05:23324841..23324865 (25 bp)
CTGCTGCTGTGTCCTGATAATGTAC
LOC_Os05g39830
Target Sequence 
AGCCCATGGATGGTGCAGCTCTGCGGCGTCCAGAGCATCAGGAGGGTCGACACCGGCAGCAGCTGGGCTACGCACGGCTG
GGCGTAGGCCGGTCGCCGCCGGCGAGCCGGCGACAAGTCGGCGTCGGTAGTAAGTGTAACAGTAACAGAAATGCACGTAC
ACCGTCGTCCACGTACACAGACGTACTCCATCATGCGTCACATGCAGTGGTTGGGCCTCCTTAAATTAACCTACTATAGA
AAGATTGGTGTACACGACATCGATCGTTCCTGTCACGTATTTGTGTGCATTGGTAATTAGCTAGCTGTTCGATCCAGTGT
CTGCTGCTGTGTCCTGATAATGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis