Browse Element(s) Details


Os.18913.2.S1_at

Description gb:AK105733.1
DB_XREF= gi:32990942
TID=Os.18913.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H09, full insert sequence.
FL= gb:AK105733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g398006/11Nodulin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39780Os.38395.3.S1_x_at10/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.2.S1_x_at8/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.4.S1_x_at6/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.1.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.5.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39790OsAffx.29842.1.S1_at11/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.2.S1_x_at5/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.3.S1_x_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.2.S1_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.3.S1_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39800Os.18913.1.S1_x_at11/115+23303526..23306003Nodulin-like family protein, expressed
LOC_Os05g39800Os.18913.2.S1_at6/115+23303526..23306003Nodulin-like family protein, expressed
LOC_Os05g39810NANA5+23306628..23309946retrotransposon protein, putative, unclassified
LOC_Os05g39830Os.53607.1.S1_at10/115+23324798..23325874expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18913.2.S1_at--900--8151Chr05:23305731..23305755 (25 bp)
GGAAAGGATAATACACAGCTCACTT
LOC_Os05g39800
Os.18913.2.S1_at--812--1291Chr05:23305763..23305786 (24 bp)
AGATGCGCTGCAAATCACTGTGACC
LOC_Os05g39800
Os.18913.2.S1_at--1141--2251NONE
AAATCACTGTGACCGGACCAAGCTT
NONE
Os.18913.2.S1_at--60--3331NONE
CACTGTGACCGGACCAAGCTTTTTT
NONE
Os.18913.2.S1_at--410--5751NONE
GACGGTTTTAATATATCCAGCCAAC
NONE
Os.18913.2.S1_at--412--3371NONE
CAGCCAACTTTTAGTGGATGTACCC
NONE
Os.18913.2.S1_at--460--7991NONE
GGATGTACCCCCAAGAAAGGCAACT
NONE
Os.18913.2.S1_at--1125--5571Chr05:23305861..23305885 (25 bp)
GAAAGGCAACTTACAGGCTGACCAT
LOC_Os05g39800
Os.18913.2.S1_at--716--3411Chr05:23305874..23305898 (25 bp)
CAGGCTGACCATTTTAGGGAAAGTT
LOC_Os05g39800
Os.18913.2.S1_at--1045--10071Chr05:23305925..23305949 (25 bp)
TAGGATAATATTGTCCCTTTTCGGG
LOC_Os05g39800
Os.18913.2.S1_at--1032--9731Chr05:23305930..23305954 (25 bp)
TAATATTGTCCCTTTTCGGGTGTAT
LOC_Os05g39800
Target Sequence 
GGAAAGGATAATACACAGCTCACTTTANTACTAGATGCGCTGCAAATCACTGTGACCGGACCAAGCTTTTTTTTTTTTAC
ATGGACGGTTTTAATATATCCAGCCAACTTTTAGTGGATGTACCCCCAAGAAAGGCAACTTACAGGCTGACCATTTTAGG
GAAAGTTGGTAGGGAAAACTTTTCTACTCAGTATAGGATAATATTGTCCCTTTTCGGGTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18913.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis