Browse Element(s) Details


Os.18913.1.S1_x_at

Description gb:AK066119.1
DB_XREF= gi:32976137
TID=Os.18913.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058N11, full insert sequence.
FL= gb:AK066119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3980011/11Nodulin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39780Os.38395.3.S1_x_at10/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.2.S1_x_at8/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.4.S1_x_at6/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.1.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.5.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39790OsAffx.29842.1.S1_at11/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.2.S1_x_at5/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.3.S1_x_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.2.S1_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.3.S1_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39800Os.18913.1.S1_x_at11/115+23303526..23306003Nodulin-like family protein, expressed
LOC_Os05g39800Os.18913.2.S1_at6/115+23303526..23306003Nodulin-like family protein, expressed
LOC_Os05g39810NANA5+23306628..23309946retrotransposon protein, putative, unclassified
LOC_Os05g39830Os.53607.1.S1_at10/115+23324798..23325874expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18913.1.S1_x_at--580--7691Chr05:23305192..23305216 (25 bp)
GGGTGAACCACAACGTGCTCGTCGC
LOC_Os05g39800
Os.18913.1.S1_x_at--66--9491Chr05:23305366..23305390 (25 bp)
TCTGCACCGTGCTGTACGCGAGGTC
LOC_Os05g39800
Os.18913.1.S1_x_at--572--1031Chr05:23305425..23305449 (25 bp)
AGGTCGACGACGATGCCATGCGCCG
LOC_Os05g39800
Os.18913.1.S1_x_at--301--3391Chr05:23305452..23305476 (25 bp)
CAGCGGCCAGCGACTAACTTAGGAG
LOC_Os05g39800
Os.18913.1.S1_x_at--233--9831Chr05:23305481..23305505 (25 bp)
TAACAAGGGACCAGAACCAGAAGTT
LOC_Os05g39800
Os.18913.1.S1_x_at--856--4351Chr05:23305497..23305521 (25 bp)
CCAGAAGTTTCTAGTACAGCAGTTT
LOC_Os05g39800
Os.18913.1.S1_x_at--672--3051Chr05:23305566..23305590 (25 bp)
AATCTACAGCTAGTGATGTGGAGTA
LOC_Os05g39800
Os.18913.1.S1_x_at--173--6931Chr05:23305588..23305612 (25 bp)
GTAGGATTTGATGATTTGCCTTTTT
LOC_Os05g39800
Os.18913.1.S1_x_at--349--3051Chr05:23305657..23305681 (25 bp)
AATCTTTTTGAGTAATCCCATGGTG
LOC_Os05g39800
Os.18913.1.S1_x_at--247--9311Chr05:23305672..23305696 (25 bp)
TCCCATGGTGGATTGAGAAGCTCAA
LOC_Os05g39800
Os.18913.1.S1_x_at--16--5411Chr05:23305688..23305712 (25 bp)
GAAGCTCAACTTGTGTGTACGTATA
LOC_Os05g39800
Target Sequence 
GGGTGAACCACAACGTGCTCGTCGCCAACATCCCCGTCGGCTCGCTCTGCTTCGGCTACCTCGCCGCGTTCCTCTACCAG
CGGGAGGCCCGCGGCGCCAGCCGCTGCGCCGGCGCCGCCTGCTACCGGGGCACCTTCCTCGTCTGGGGCGCCACGTGCGC
CGTCGGGACGGCGCTCTGCACCGTGCTGTACGCGAGGTCGCGCGGCTTCGCCGGGAGGCTACCGCCGCCGGCGAGGTCGA
CGACGATGCCATGCGCCGGCCAGCGGCCAGCGACTAACTTAGGAGATGATAACAAGGGACCAGAACCAGAAGTTTCTAGT
ACAGCAGTTTAACAAATTAATTAGGTGCCACGTAATTAATTAAGTGGAGAAAAAAATCTACAGCTAGTGATGTGGAGTAG
GATTTGATGATTTGCCTTTTTTTTTCCTCTGGGAAAAATATTTTGTTTCATTAGTTTCTTTTTCTAATCTTTTTGAGTAA
TCCCATGGTGGATTGAGAAGCTCAACTTGTGTGTACGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18913.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis