Browse Element(s) Details


OsAffx.15033.1.S1_at

Description tigr:9633.m03713
TID=OsAffx.15033.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3987010/11CBL-interacting serine/threonine-protein kinase 15, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39830Os.53607.1.S1_at10/115+23324798..23325874expressed protein
LOC_Os05g39840Os.51844.1.S1_at11/115+23333209..23336128expressed protein
LOC_Os05g39850OsAffx.27244.1.S1_x_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39850Os.23359.1.S1_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39860OsAffx.15031.1.S1_at11/115+23343439..23344701expressed protein
LOC_Os05g39870OsAffx.15033.1.S1_at10/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39870OsAffx.15033.2.S1_at1/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39880Os.46919.1.S1_at10/115+23350940..23353272expressed protein
LOC_Os05g39890NANA5+23354608..23355090NAF domain containing protein
LOC_Os05g39900OsAffx.15033.2.S1_at11/115+23358227..23359325Protein kinase domain containing protein
LOC_Os05g39910OsAffx.27245.1.S1_at7/115+23367994..23369401hypothetical protein
LOC_Os05g39920NANA5+23371317..23375666retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0005829cellular_componentcytosol
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15033.1.S1_at--1150--1072Chr05:23354579..23354603 (25 bp)
AGGGCAGACTTGAGCTTGATGCAGA
NONE
OsAffx.15033.1.S1_at--1028--8114Chr05:23359442..23359466 (25 bp)
GGACATTAGGCCATCACTCAAGGAT
NONE
OsAffx.15033.1.S1_at--973--8152Chr05:23356635..23356659 (25 bp)
GGAAACTCTATCGAGCTGCCAAATG
NONE
OsAffx.15033.1.S1_at--828--7691Chr05:23347001..23347025 (25 bp)
GGGTCACGGTTACTTATTCCACTAG
LOC_Os05g39870
OsAffx.15033.1.S1_at--779--5471Chr05:23346974..23346998 (25 bp)
GAACTTCCTGGTCATGGACTCATGG
LOC_Os05g39870
OsAffx.15033.1.S1_at--1005--8111Chr05:23346959..23346983 (25 bp)
GGACTCATGGTCACGGAAACTGCAG
LOC_Os05g39870
OsAffx.15033.1.S1_at--539--3291Chr05:23346910..23346934 (25 bp)
CAAAGGCGAGGCTTACAATGCAGAT
LOC_Os05g39870
OsAffx.15033.1.S1_at--736--3191Chr05:23346895..23346919 (25 bp)
CAATGCAGATTGTGTCTCCAGGAGG
LOC_Os05g39870
OsAffx.15033.1.S1_at--434--991NONE
AGGAGGTCTATTGAGGTCTGTGCCA
NONE
OsAffx.15033.1.S1_at--116--7811Chr05:23346379..23346403 (25 bp)
GGTCTGTGCCAAATTGCTAGAGCCA
LOC_Os05g39870
OsAffx.15033.1.S1_at--1135--8091Chr05:23346322..23346346 (25 bp)
GGACCGCCGGAGATGTAAACTAATT
LOC_Os05g39870
Target Sequence 
AGGGCAGACTTGAGCTTGATGCAGAGGTTTCTGAGGTTGCTCCTTTTCTCTTAGTTGAGTTGAAGAAAACTAATGGTGAC
ACATTGGAGTATCAAAGGATGATGAAAGAGGACATTAGGCCATCACTCAAGGATATTATTTGGACATGGCAAGGAAACTC
TATCGAGCTGCCAAATGATGAATTGACGGTCCAATGTAGTGAAGGTGAAGTACAGAAGCAATCAAGGCTACCAAGCATCA
AGAATTTTCTGGACAGGGTCACGGTTACTTATTCCACTAGTAGAACTTCCTGGTCATGGACTCATGGTCACGGAAACTGC
AGTAAGAATGCAAGCAAAAATGGAATCAAAGGCGAGGCTTACAATGCAGATTGTGTCTCCAGGAGGTCTATTGAGGTCTG
TGCCAAATTGCTAGAGCCAGATGATCAGATGACTAAACTAATTGATAGGCTGGACCGCCGGAGATGTAAACTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis