Browse Element(s) Details


Os.46919.1.S1_at

Description gb:AK106783.1
DB_XREF= gi:32991992
TID=Os.46919.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H09, full insert sequence.
FL= gb:AK106783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3988010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39840Os.51844.1.S1_at11/115+23333209..23336128expressed protein
LOC_Os05g39850OsAffx.27244.1.S1_x_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39850Os.23359.1.S1_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39860OsAffx.15031.1.S1_at11/115+23343439..23344701expressed protein
LOC_Os05g39870OsAffx.15033.1.S1_at10/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39870OsAffx.15033.2.S1_at1/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39880Os.46919.1.S1_at10/115+23350940..23353272expressed protein
LOC_Os05g39890NANA5+23354608..23355090NAF domain containing protein
LOC_Os05g39900OsAffx.15033.2.S1_at11/115+23358227..23359325Protein kinase domain containing protein
LOC_Os05g39910OsAffx.27245.1.S1_at7/115+23367994..23369401hypothetical protein
LOC_Os05g39920NANA5+23371317..23375666retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46919.1.S1_at--42--8671Chr05:23351270..23351294 (25 bp)
TGGGCCAGCGTGATCGTCTCTGAAA
LOC_Os05g39880
Os.46919.1.S1_at--1083--6391Chr05:23351259..23351283 (25 bp)
GATCGTCTCTGAAAACTGTGGCATT
LOC_Os05g39880
Os.46919.1.S1_at--782--8491Chr05:23351228..23351252 (25 bp)
TGGCTTTTGGTTGGGCCTACCACGA
LOC_Os05g39880
Os.46919.1.S1_at--474--10531Chr05:23351150..23351174 (25 bp)
TTCATGTGATCCCTGCGCACATCAT
LOC_Os05g39880
Os.46919.1.S1_at--202--3311Chr05:23351133..23351157 (25 bp)
CACATCATTCTTGGCTACCTAGTGA
LOC_Os05g39880
Os.46919.1.S1_at--614--8971Chr05:23351103..23351127 (25 bp)
TGAAAAACACAGTACCACCACCGGC
LOC_Os05g39880
Os.46919.1.S1_at--453--10371Chr05:23351035..23351059 (25 bp)
TTTTTTCACTCCTAGTTATCTCCCG
LOC_Os05g39880
Os.46919.1.S1_at--614--1211Chr05:23351022..23351046 (25 bp)
AGTTATCTCCCGGTGCTTTCAGTTC
LOC_Os05g39880
Os.46919.1.S1_at--189--10331Chr05:23351006..23351030 (25 bp)
TTTCAGTTCTCGCATCATGCCTGCA
LOC_Os05g39880
Os.46919.1.S1_at--799--6391Chr05:23350967..23350991 (25 bp)
GATCGATCAAGTGTACATTTCTCAT
LOC_Os05g39880
Os.46919.1.S1_at--352--7051Chr05:23350940..23350964 (25 bp)
GTAACAAGACTCATCGTCGTCTATC
NONE
Target Sequence 
TGGGCCAGCGTGATCGTCTCTGAAAACTGTGGCATTGCAGTGTGGCTTTTGGTTGGGCCTACCACGAGGCGATGGCGCAG
AGGAGAGATGAGGAGGAAAGCTGCTGCCCCCAGGCGCCTCTTCATGTGATCCCTGCGCACATCATTCTTGGCTACCTAGT
GAAAAACTGAAAAACACAGTACCACCACCGGCCGAGTCCCTTTGCCATGTTATACATATATATATCTCCCCTTTTTTTTT
TCACTCCTAGTTATCTCCCGGTGCTTTCAGTTCTCGCATCATGCCTGCACGGGGCATGCAACAGATCGATCAAGTGTACA
TTTCTCATTTGTAACAAGACTCATCGTCGTCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis