Browse Element(s) Details


Os.51844.1.S1_at

Description gb:AK064010.1
DB_XREF= gi:32974028
TID=Os.51844.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-G11, full insert sequence.
FL= gb:AK064010.1 gb:AK102615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3984011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39810NANA5+23306628..23309946retrotransposon protein, putative, unclassified
LOC_Os05g39830Os.53607.1.S1_at10/115+23324798..23325874expressed protein
LOC_Os05g39840Os.51844.1.S1_at11/115+23333209..23336128expressed protein
LOC_Os05g39850OsAffx.27244.1.S1_x_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39850Os.23359.1.S1_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39860OsAffx.15031.1.S1_at11/115+23343439..23344701expressed protein
LOC_Os05g39870OsAffx.15033.1.S1_at10/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39870OsAffx.15033.2.S1_at1/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39880Os.46919.1.S1_at10/115+23350940..23353272expressed protein
LOC_Os05g39890NANA5+23354608..23355090NAF domain containing protein
LOC_Os05g39900OsAffx.15033.2.S1_at11/115+23358227..23359325Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51844.1.S1_at--1156--8911Chr05:23335704..23335728 (25 bp)
TGAGCCAGAAGTACGACGCCCTGTC
LOC_Os05g39840
Os.51844.1.S1_at--811--8711Chr05:23335725..23335749 (25 bp)
TGTCGCCGCTGAGGATCGATCACGG
LOC_Os05g39840
Os.51844.1.S1_at--588--4991Chr05:23335761..23335785 (25 bp)
GCAGGCAGTTCCACCCCAGGAGGAG
LOC_Os05g39840
Os.51844.1.S1_at--1157--9251Chr05:23335815..23335839 (25 bp)
TCCTCGCCAAGCACAGGCACAGGAA
LOC_Os05g39840
Os.51844.1.S1_at--996--1551Chr05:23335895..23335919 (25 bp)
AGCTTCAGCACCAAGGCTGTGTATT
LOC_Os05g39840
Os.51844.1.S1_at--474--3891Chr05:23335943..23335967 (25 bp)
CTGGATCAATGAGTAGTAGCTATGC
LOC_Os05g39840
Os.51844.1.S1_at--432--10051Chr05:23336009..23336033 (25 bp)
TAGTTAGTTCTATGCACAAAGTTGA
LOC_Os05g39840
Os.51844.1.S1_at--211--3151Chr05:23336034..23336058 (25 bp)
AATTCAGCAGCTACTCCAGGTTGTA
LOC_Os05g39840
Os.51844.1.S1_at--309--4831Chr05:23336043..23336067 (25 bp)
GCTACTCCAGGTTGTAAGTATGTAC
LOC_Os05g39840
Os.51844.1.S1_at--291--2091Chr05:23336070..23336094 (25 bp)
ACATCTACTGTTCTTGCGGTTTCGA
LOC_Os05g39840
Os.51844.1.S1_at--843--4051Chr05:23336092..23336116 (25 bp)
CGAGAGAAATTTCAACCGCGGCGAT
LOC_Os05g39840
Target Sequence 
TGAGCCAGAAGTACGACGCCCTGTCGCCGCTGAGGATCGATCACGGCGGCGCGTCGCGCAGGCAGTTCCACCCCAGGAGG
AGGAAGCTGGGGTTCGTCGTGTACGCGCTGCTCCTCGCCAAGCACAGGCACAGGAAGAAGAGGCAGCCCGCCGCCGCCGC
CGCCGCCGACTCCTCCTCTTGCACCCATGGCAGCTTCAGCACCAAGGCTGTGTATTAATTAGCAACATTTTTTTTTTCTT
CTGGATCAATGAGTAGTAGCTATGCAGTGTAATAGTACAGACTTATGAATAATCAGCATGTGTAATTAGTTAGTTCTATG
CACAAAGTTGAAATTCAGCAGCTACTCCAGGTTGTAAGTATGTACAAACATCTACTGTTCTTGCGGTTTCGAGAGAAATT
TCAACCGCGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis