Browse Element(s) Details


OsAffx.22147.1.S1_x_at

Description gb:NM_188272.1
DB_XREF= gi:34903627
GEN=B1046G12.21
TID=OsAffx.22147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1046G12.21 (B1046G12.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g074802/11HNH endonuclease domain-containing protein, putative, expressed
LOC_Os05g072502/11Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g400501/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07430OsAffx.5240.1.S1_at11/117+3705107..3706216CAF1 family ribonuclease containing protein
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed
LOC_Os07g07500OsAffx.16136.1.S1_at11/117+3731691..3733640hypothetical protein
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0015031biological_processprotein transport
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0016020cellular_componentmembrane
GO:0004519molecular_functionendonuclease activity
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0015450molecular_functionprotein translocase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22147.1.S1_x_at--765--7573Chr05:3815602..3815623 (22 bp)
GGGCGAGCGGATGTCGTCGAGCCGT
LOC_Os05g07250
OsAffx.22147.1.S1_x_at--684--4613Chr05:3815602..3815625 (24 bp)
GCGAGCGGATGTCGTCGAGCCGTCG
LOC_Os05g07250
OsAffx.22147.1.S1_x_at--154--8152Chr05:23440945..23440964 (20 bp)
GGACACCGTGAACGACGACGTGCTC
LOC_Os05g40050
OsAffx.22147.1.S1_x_at--910--4792Chr01:5394652..5394676 (25 bp)
GCTCGCGCGCGGGTGGTCTTCAACT
NONE
OsAffx.22147.1.S1_x_at--857--9332Chr01:5394654..5394678 (25 bp)
TCGCGCGCGGGTGGTCTTCAACTCG
NONE
OsAffx.22147.1.S1_x_at--511--4552Chr01:5394656..5394680 (25 bp)
GCGCGCGGGTGGTCTTCAACTCGGG
NONE
OsAffx.22147.1.S1_x_at--640--4792Chr01:5394714..5394738 (25 bp)
GCTCCTGGCGCCGTGGTTGGAGGAC
NONE
OsAffx.22147.1.S1_x_at--979--8351Chr01:5394784..5394808 (25 bp)
GGCGGAGGCTGTGGTGTTCATCAAC
NONE
OsAffx.22147.1.S1_x_at--549--8011Chr01:5394787..5394811 (25 bp)
GGAGGCTGTGGTGTTCATCAACGGG
NONE
OsAffx.22147.1.S1_x_at--57--692Chr07:3723153..3723173 (21 bp)
ATGAGGCGACGATCTGTCCGGGTTC
LOC_Os07g07480
OsAffx.22147.1.S1_x_at--182--8433Chr07:3723177..3723201 (25 bp)
GGCCTGGTTCTTGATCTCTCTTATA
LOC_Os07g07480
Target Sequence 
GGGCGAGCGGATGTCGTCGAGCCGTCGCCATCCTCGCCGCGGCGGACACCGTGAACGACGACGTGCTCGCGCGCGGGTGG
TCTTCAACTCGGGGGTGTCCAACCCGGGGAAGGGAGGGGGGGGGGAGCTCCTGGCGCCGTGGTTGGAGGACGCCGACCGC
GCCCAACGACGACGAGCGCGCGGAGAAGGATGAGGCGGCGGAGGCTGTGGTGTTCATCAACGGGGAGGACGATGAGGCGA
CGATCTGTCCGGGTTCAGGGGCCTGGTTCTTGATCTCTCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22147.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis