Browse Element(s) Details


Os.18299.1.S1_at

Description gb:AK121818.1
DB_XREF= gi:37991441
TID=Os.18299.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.18299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-007-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099A15, full insert sequence.
FL= gb:AK121818.1 gb:AK060318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0741011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07350Os.51482.1.S1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07350Os.6805.1.A1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07360OsAffx.28323.1.S1_at10/117+3679836..3682617hypothetical protein
LOC_Os07g07360OsAffx.3376.1.S1_at1/117+3679836..3682617hypothetical protein
LOC_Os07g07370NANA7+3683751..3683966A20-like zinc finger family protein
LOC_Os07g07380OsAffx.28324.1.S1_at11/117+3686657..3687025hypothetical protein
LOC_Os07g07390OsAffx.12670.1.S1_at1/117+3688467..3690622Calcium binding EGF domain containing protein
LOC_Os07g07400OsAffx.16134.1.S1_at11/117+3696970..3697428AN1-like Zinc finger family protein
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07430OsAffx.5240.1.S1_at11/117+3705107..3706216CAF1 family ribonuclease containing protein
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18299.1.S1_at--405--1031Chr07:3698877..3698901 (25 bp)
AGGTCTCCTACAATGGCGACTGGAT
LOC_Os07g07410
Os.18299.1.S1_at--763--1751Chr07:3698946..3699393 (25 bp)
ACCTCCTCGAGATTGCGACGAACGG
LOC_Os07g07410
Os.18299.1.S1_at--182--4091Chr07:3699384..3699408 (25 bp)
CGACGAACGGAGTGCTGAAGAGCAT
LOC_Os07g07410
Os.18299.1.S1_at--939--8991Chr07:3699399..3699423 (25 bp)
TGAAGAGCATCGAGCACAGGGCGAT
LOC_Os07g07410
Os.18299.1.S1_at--16--8531Chr07:3699477..3699501 (25 bp)
TGGACTGCCTCGTCGGACCGGCGAA
LOC_Os07g07410
Os.18299.1.S1_at--301--9691Chr07:3699543..3699567 (25 bp)
TCACGTTCCGCGAGTTCATGCGCAT
LOC_Os07g07410
Os.18299.1.S1_at--924--5631Chr07:3699593..3699617 (25 bp)
GACAGCGTCGAGAAGGCCTTCAAAA
LOC_Os07g07410
Os.18299.1.S1_at--262--891Chr07:3699606..3699630 (25 bp)
AGGCCTTCAAAATCTGATCCTGACA
LOC_Os07g07410
Os.18299.1.S1_at--312--5411Chr07:3699681..3699705 (25 bp)
GAAGCTGATTATTAGCAACCGATAA
LOC_Os07g07410
Os.18299.1.S1_at--353--5151Chr07:3699695..3699719 (25 bp)
GCAACCGATAAGTGTTTCATCAGCA
LOC_Os07g07410
Os.18299.1.S1_at--1021--711Chr07:3699759..3699783 (25 bp)
ATGTAACTGTACCTGTAACACCCTC
LOC_Os07g07410
Target Sequence 
AGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAG
ATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGAC
GTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCA
CCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATC
TGATCCTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAAC
CGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACAC
CCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis