Browse Element(s) Details


Os.51482.1.S1_at

Description gb:AK062924.1
DB_XREF= gi:32972942
TID=Os.51482.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51482 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-H11, full insert sequence.
FL= gb:AK062924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0735011/11Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07310Os.23950.1.A1_at11/117+3643991..3655054polynucleotide phosphorylase, putative, expressed
LOC_Os07g07320Os.13016.1.S1_a_at11/117+3660674..3661707Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os07g07329NANA7+3662263..3662611NA
LOC_Os07g07340Os.52598.1.S1_at11/117+3667137..3670556Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g07340OsAffx.25749.1.S1_s_at2/117+3667137..3670556Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g07350Os.51482.1.S1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07350Os.6805.1.A1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07360OsAffx.28323.1.S1_at10/117+3679836..3682617hypothetical protein
LOC_Os07g07360OsAffx.3376.1.S1_at1/117+3679836..3682617hypothetical protein
LOC_Os07g07370NANA7+3683751..3683966A20-like zinc finger family protein
LOC_Os07g07380OsAffx.28324.1.S1_at11/117+3686657..3687025hypothetical protein
LOC_Os07g07390OsAffx.12670.1.S1_at1/117+3688467..3690622Calcium binding EGF domain containing protein
LOC_Os07g07400OsAffx.16134.1.S1_at11/117+3696970..3697428AN1-like Zinc finger family protein
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51482.1.S1_at--278--4931Chr07:3676312..3676336 (25 bp)
GCTTGCTTGCGATTTGATTGTGTGT
LOC_Os07g07350
Os.51482.1.S1_at--489--31Chr07:3676296..3676320 (25 bp)
ATTGTGTGTTCGGAGGTTGACCTTA
LOC_Os07g07350
Os.51482.1.S1_at--273--6591Chr07:3676247..3676271 (25 bp)
GATTGCTTCCAAATTTGCTGCGATT
LOC_Os07g07350
Os.51482.1.S1_at--394--5991Chr07:3676138..3676162 (25 bp)
GAGACATAGAATTCTCTCGCTTATG
LOC_Os07g07350
Os.51482.1.S1_at--935--10851Chr07:3676106..3676130 (25 bp)
TTGGATGTGGCATGTTGCTCCCAGC
LOC_Os07g07350
Os.51482.1.S1_at--325--451Chr07:3676078..3676102 (25 bp)
ATCTCAATCGTGTGAACCTCCATGA
LOC_Os07g07350
Os.51482.1.S1_at--1003--7611Chr07:3676046..3676070 (25 bp)
GGGAAGCTACGCCAACGATTGATAC
LOC_Os07g07350
Os.51482.1.S1_at--729--331Chr07:3676025..3676049 (25 bp)
ATACACGGTTTCTGTGTGCTTTGCC
LOC_Os07g07350
Os.51482.1.S1_at--202--7331Chr07:3676010..3676034 (25 bp)
GTGCTTTGCCTTTGCGCGGAGATTG
LOC_Os07g07350
Os.51482.1.S1_at--404--2891Chr07:3675974..3675998 (25 bp)
AAGGGATCAACCTTTCTTGCCGTGC
LOC_Os07g07350
Os.51482.1.S1_at--189--311Chr07:3675915..3675939 (25 bp)
ATAGCGCCATGGGATTTCTTGATAA
LOC_Os07g07350
Target Sequence 
GCTTGCTTGCGATTTGATTGTGTGTTCGGAGGTTGACCTTATGGTTATCGATTTTGCTGTGATTTGATTGCTTCCAAATT
TGCTGCGATTTGATTTGATTCTAAGATGTAGTCATGTAGGGGAGATGATTTTTTTTTTTTTACTTTTTGAGCCAATCAGC
ATAGGGAGGAGTGGGAGACATAGAATTCTCTCGCTTATGAGGAAAATTGGATGTGGCATGTTGCTCCCAGCCTTATCTCA
ATCGTGTGAACCTCCATGAGAGGTGAGGGAAGCTACGCCAACGATTGATACACGGTTTCTGTGTGCTTTGCCTTTGCGCG
GAGATTGATAAAGGATTAAAGGGATCAACCTTTCTTGCCGTGCATGGCAAATCAGCGATTGATTATATTCTGGGGGGATA
GCGCCATGGGATTTCTTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis