Browse Element(s) Details


Os.21088.1.S1_at

Description gb:CB656315
DB_XREF= gi:29660040
DB_XREF=OSJNEc10I13.r
CLONE=OSJNEc10I13
TID=Os.21088.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.21088 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_179964.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0748011/11HNH endonuclease domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07430OsAffx.5240.1.S1_at11/117+3705107..3706216CAF1 family ribonuclease containing protein
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed
LOC_Os07g07500OsAffx.16136.1.S1_at11/117+3731691..3733640hypothetical protein
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004519molecular_functionendonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21088.1.S1_at--582--1171Chr07:3723564..3723588 (25 bp)
AGTACTATGACCAGACTGTCTCCTC
LOC_Os07g07480
Os.21088.1.S1_at--1053--1091Chr07:3723593..3723617 (25 bp)
AGTGGATCATTCTACATCCCTGCAG
LOC_Os07g07480
Os.21088.1.S1_at--322--1231Chr07:3723616..3723800 (25 bp)
AGTTCTCAGGGTTCCAGAGCTGCTG
LOC_Os07g07480
Os.21088.1.S1_at--195--6071Chr07:3723820..3723844 (25 bp)
GAGTTAAGCACAGCCTTAGCCGTAA
LOC_Os07g07480
Os.21088.1.S1_at--376--10791Chr07:3724091..3724115 (25 bp)
TTGATCATGTCATTCCGACTGCACG
LOC_Os07g07480
Os.21088.1.S1_at--748--5511Chr07:3724135..3724301 (25 bp)
GAAAATCTGGTGACTGCATGCTCAA
LOC_Os07g07480
Os.21088.1.S1_at--407--10251Chr07:3724486..3724510 (25 bp)
TTTGACATTCTTGCAGTACCCTTGA
LOC_Os07g07480
Os.21088.1.S1_at--328--4751Chr07:3724516..3724540 (25 bp)
GCTGCATTCAGGACGCTCAAGAGGA
LOC_Os07g07480
Os.21088.1.S1_at--1109--8471Chr07:3724561..3724585 (25 bp)
TGGCTGCAATACTTGGCCAGGCCAT
LOC_Os07g07480
Os.21088.1.S1_at--885--2811Chr07:3724661..3724685 (25 bp)
AAGATTCACCTGTGCGCATCAGAAA
LOC_Os07g07480
Os.21088.1.S1_at--169--1431Chr07:3724681..3724705 (25 bp)
AGAAACTCTGTACATGCCTGACTCA
LOC_Os07g07480
Target Sequence 
AGTACTATGACCAGACTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAG
GTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTATTG
TTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTGA
CTGCATGCTCAAGATGCAACTCCAGGAANGGCCAGAAGACAGTGGAGCAAGCAAACATGAAGCTACTCAAGGTCCCCAAG
GCGCCAAAGGAATTTGACATTCTTGCAGTACCCTTGACAAAAGCTGCATTCAGGACGCTCAAGAGGAGCCAAGGGTTGCC
TGAAGAATGGCTGCAATACTTGGCCAGGCCATCTCCATGAACACCAGCTCCAGAAATTAGTGGCCATCTGTCAATGTATA
TATATTAACTAGGCTATTCTTCAGCCCAAGATTCACCTGTGCGCATCAGAAACTCTGTACATGCCTGACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis