Browse Element(s) Details


OsAffx.5240.1.S1_at

Description tigr:9635.m00689
TID=OsAffx.5240.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY063985 putative CCR4-associated factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0743011/11CAF1 family ribonuclease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07360OsAffx.28323.1.S1_at10/117+3679836..3682617hypothetical protein
LOC_Os07g07360OsAffx.3376.1.S1_at1/117+3679836..3682617hypothetical protein
LOC_Os07g07370NANA7+3683751..3683966A20-like zinc finger family protein
LOC_Os07g07380OsAffx.28324.1.S1_at11/117+3686657..3687025hypothetical protein
LOC_Os07g07390OsAffx.12670.1.S1_at1/117+3688467..3690622Calcium binding EGF domain containing protein
LOC_Os07g07400OsAffx.16134.1.S1_at11/117+3696970..3697428AN1-like Zinc finger family protein
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07430OsAffx.5240.1.S1_at11/117+3705107..3706216CAF1 family ribonuclease containing protein
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5240.1.S1_at--948--8631Chr07:3705643..3705667 (25 bp)
TGGGAGTTCAACTTCCGGGAGTTCG
LOC_Os07g07430
OsAffx.5240.1.S1_at--613--1151Chr07:3705591..3705615 (25 bp)
AGTCGATCGCGCTGCTGCGTTCCAA
LOC_Os07g07430
OsAffx.5240.1.S1_at--569--9091Chr07:3705579..3705603 (25 bp)
TGCTGCGTTCCAAGGGCGTCGACTT
LOC_Os07g07430
OsAffx.5240.1.S1_at--852--8311Chr07:3705468..3705492 (25 bp)
GGCTCGTCACGTTCAGCGGCGCCTA
LOC_Os07g07430
OsAffx.5240.1.S1_at--362--9951Chr07:3705445..3705469 (25 bp)
TACGACCTCGCCTACATGCTCAAGA
LOC_Os07g07430
OsAffx.5240.1.S1_at--686--631Chr07:3705430..3705454 (25 bp)
ATGCTCAAGATGCTCTACGGCGGCG
LOC_Os07g07430
OsAffx.5240.1.S1_at--986--8951Chr07:3705212..3705236 (25 bp)
TGACAGCCTGCTGACGTCGCAGATG
LOC_Os07g07430
OsAffx.5240.1.S1_at--85--8951Chr07:3705201..3705225 (25 bp)
TGACGTCGCAGATGTTCATGCGGAT
LOC_Os07g07430
OsAffx.5240.1.S1_at--595--9611Chr07:3705186..3705210 (25 bp)
TCATGCGGATGAGGGAACGCTACTT
LOC_Os07g07430
OsAffx.5240.1.S1_at--835--6131Chr07:3705176..3705200 (25 bp)
GAGGGAACGCTACTTCGACGACCAA
LOC_Os07g07430
OsAffx.5240.1.S1_at--1031--4491Chr07:3705139..3705163 (25 bp)
GCCGTCGCCGGCATTAATTTTGGAT
LOC_Os07g07430
Target Sequence 
TGGGAGTTCAACTTCCGGGAGTTCGACCTCCGGCGACACGCGCACGCGCCGGAGTCGATCGCGCTGCTGCGTTCCAAGGG
CGTCGACTTCGACCGGACGCGGCGGGGCGGCGTCGACGCGGCGGCGTTCGGCCCGCGGCTGCGCAGGTGGCTGCGCGCCG
GCCTCGGCCGCGCCGGGCTCGTCACGTTCAGCGGCGCCTACGACCTCGCCTACATGCTCAAGATGCTCTACGGCGGCGGC
GGCGGCGGCTACCGGCTGCCCGGCGACGCGGCGACGTTCGAGTTCGTGGTGAGGGCGGTGATAGGGAGGACGCTGTACGA
CGTGGGCAAGATGGCGCGGCACTGCCCCGGCGACATGCGCGGCGGGCTGGAGCGCGTCGCCGGGAAGCTCGGCGTGCGGC
GCGCCGTCGGCGAGGCGCACCAGGCCGGCTCTGACAGCCTGCTGACGTCGCAGATGTTCATGCGGATGAGGGAACGCTAC
TTCGACGACCAAGACGCGCTCACGGCCGTCGCCGGCATTAATTTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis