Browse Element(s) Details


Os.11982.1.S1_at

Description gb:AK105761.1
DB_XREF= gi:32990970
TID=Os.11982.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.11982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D07, full insert sequence.
FL= gb:AK105761.1 gb:AK102495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0747011/112-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07400OsAffx.16134.1.S1_at11/117+3696970..3697428AN1-like Zinc finger family protein
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07430OsAffx.5240.1.S1_at11/117+3705107..3706216CAF1 family ribonuclease containing protein
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed
LOC_Os07g07500OsAffx.16136.1.S1_at11/117+3731691..3733640hypothetical protein
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0010240cellular_componentpyruvate dehydrogenase complex (sensu Viridiplantae)
GO:0003863molecular_function3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity
GO:0004802molecular_functiontransketolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11982.1.S1_at--26--7651Chr07:3718296..3718320 (25 bp)
GGGAGCTCAACTTGCAGTACTGGAA
LOC_Os07g07470
Os.11982.1.S1_at--256--1191Chr07:3717648..3717672 (25 bp)
AGTAGAGGCCTCTGTCAGCAAGACA
LOC_Os07g07470
Os.11982.1.S1_at--837--671Chr07:3717527..3717551 (25 bp)
ATGAGGCTCCAATCACCGGAGGGTT
LOC_Os07g07470
Os.11982.1.S1_at--655--7771Chr07:3717501..3717525 (25 bp)
GGTGCAGAAATTGCCGCATCCATCA
LOC_Os07g07470
Os.11982.1.S1_at--251--4071Chr07:3717374..3717499 (25 bp)
CGAGCGCTGCTTCCAAAGGTTAGAA
LOC_Os07g07470
Os.11982.1.S1_at--559--10231Chr07:3717355..3717379 (25 bp)
TTAGAAGCGCCCGTCGCAAGAGTAT
LOC_Os07g07470
Os.11982.1.S1_at--680--7791Chr07:3717188..3717212 (25 bp)
GGTCCTGGACGCTATCAAAGCAACT
LOC_Os07g07470
Os.11982.1.S1_at--279--7311Chr07:3717150..3717174 (25 bp)
GTGCTGGAGCAAGCTACCTATGCGT
LOC_Os07g07470
Os.11982.1.S1_at--1--1751Chr07:3717135..3717159 (25 bp)
ACCTATGCGTTGTTCCTTGACAGTA
LOC_Os07g07470
Os.11982.1.S1_at--659--9011Chr07:3717095..3717119 (25 bp)
TGCACCTTATTGCTGGTTGTAGCCT
LOC_Os07g07470
Os.11982.1.S1_at--1156--6631Chr07:3717080..3717104 (25 bp)
GTTGTAGCCTGAATATGCATCTCCA
LOC_Os07g07470
Target Sequence 
GGGAGCTCAACTTGCAGTACTGGAAGAAGCATGCGAAGATGCAGCAAAGGATGGAATATCTTGTGAGCTCATAGATCTAA
GAACACTGATTCCATGGGACAAAGAAACAGTAGAGGCCTCTGTCAGCAAGACAGGAAAACTTCTTGTTAGCCATGAGGCT
CCAATCACCGGAGGGTTTGGTGCAGAAATTGCCGCATCCATCACCGAGCGCTGCTTCCAAAGGTTAGAAGCGCCCGTCGC
AAGAGTATGCGGCCTGGACACTCCTTTCCCTCTTGTTTATGAAACATTTTACATGCCCACAAAGAACAAGGTCCTGGACG
CTATCAAAGCAACTGTAAATTACTGAGGTGCTGGAGCAAGCTACCTATGCGTTGTTCCTTGACAGTATAGACAAAAATTA
TGTGCACCTTATTGCTGGTTGTAGCCTGAATATGCATCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis