Browse Element(s) Details


Os.54574.1.S1_at

Description gb:AK105849.1
DB_XREF= gi:32991058
TID=Os.54574.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G07, full insert sequence.
FL= gb:AK105849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0752011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed
LOC_Os07g07500OsAffx.16136.1.S1_at11/117+3731691..3733640hypothetical protein
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07530Os.54674.1.S1_at11/117+3752692..3756154expressed protein
LOC_Os07g07530Os.29072.1.S1_at3/117+3752692..3756154expressed protein
LOC_Os07g07540Os.2422.1.S1_a_at11/117+3758223..3760268SHOOT1 protein, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_x_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07560Os.20555.1.S1_at11/117+3771600..3778097protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54574.1.S1_at--857--291Chr07:3747725..3747749 (25 bp)
ATACCGGTCCACCAATGCGACGTTA
LOC_Os07g07520
Os.54574.1.S1_at--604--8871Chr07:3747759..3747783 (25 bp)
TGATGGTTACCACAGCGCAGATCCT
LOC_Os07g07520
Os.54574.1.S1_at--402--4591Chr07:3747773..3747797 (25 bp)
GCGCAGATCCTCATGATGCTGTATG
LOC_Os07g07520
Os.54574.1.S1_at--978--7511Chr07:3747800..3747824 (25 bp)
GTGGCCATGAGTGCACGTACACGAT
LOC_Os07g07520
Os.54574.1.S1_at--118--3911Chr07:3747880..3747904 (25 bp)
CGGTGGCCACCGATGAAAGTTTCAA
LOC_Os07g07520
Os.54574.1.S1_at--1072--8071Chr07:3747917..3747941 (25 bp)
GGAGCTGGGAGCTATCCAACCATCT
LOC_Os07g07520
Os.54574.1.S1_at--317--2891Chr07:3747976..3748000 (25 bp)
AAGGGATGTACAGGTCCTCTGTTCC
LOC_Os07g07520
Os.54574.1.S1_at--13--3751Chr07:3747992..3748016 (25 bp)
CTCTGTTCCCCGTTTGGTGAATGAA
LOC_Os07g07520
Os.54574.1.S1_at--844--5251Chr07:3748014..3748038 (25 bp)
GAATCCACTTCTATGGTAGTAGCAG
LOC_Os07g07520
Os.54574.1.S1_at--10--5832Chr07:3748040..3748064 (25 bp)
GACCGGTAATAGTCGCGATCTCCAA
LOC_Os07g07520
Os.54574.1.S1_at--63--2031Chr07:3748209..3748233 (25 bp)
ACTACATGATTTCCTGTGCGTTGCT
LOC_Os07g07520
Target Sequence 
ATACCGGTCCACCAATGCGACGTTACTTCCACCCTGATGGTTACCACAGCGCAGATCCTCATGATGCTGTATGGGGTGGC
CATGAGTGCACGTACACGATCATAACAAGCTTTGCTGGTAATGGATGTATCAGGGATCATTATGTGAGGATCAATCGGTG
GCCACCGATGAAAGTTTCAAGGAAGGAGGATTGGAGCTGGGAGCTATCCAACCATCTTTACCGCTACAACAGCATCCCTG
ACACTGACAAGAAGGGATGTACAGGTCCTCTGTTCCCCGTTTGGTGAATGAATCCACTTCTATGGTAGTAGCAGTGACCG
GTAATAGTCGCGATCTCCAACTCATAGAAACTGGNCTCGGATCGTTCCTGACCCTGAGGAACGTGATAACGAGAGGCTCT
GTTTGGCAGTTATGAGCTATNAANACCAATGGNNNNTAAGCTTACTTATGTGGTATACTGGTATGTAACGTACTCCTATA
TAGTACTACATGATTTCCTGTGCGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis