Browse Element(s) Details


Os.54674.1.S1_at

Description gb:AK106442.1
DB_XREF= gi:32991651
TID=Os.54674.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D11, full insert sequence.
FL= gb:AK106442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0753011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed
LOC_Os07g07500OsAffx.16136.1.S1_at11/117+3731691..3733640hypothetical protein
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07530Os.54674.1.S1_at11/117+3752692..3756154expressed protein
LOC_Os07g07530Os.29072.1.S1_at3/117+3752692..3756154expressed protein
LOC_Os07g07540Os.2422.1.S1_a_at11/117+3758223..3760268SHOOT1 protein, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_x_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07560Os.20555.1.S1_at11/117+3771600..3778097protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54674.1.S1_at--886--731Chr07:3754101..3754125 (25 bp)
ATGTTCTCTCTCTAGTTACACTGTT
LOC_Os07g07530
Os.54674.1.S1_at--455--10151Chr07:3754186..3754210 (25 bp)
TATCTCAATGCATCAGGACACTCCT
LOC_Os07g07530
Os.54674.1.S1_at--1032--6391Chr07:3754452..3754476 (25 bp)
GATCTGAATTGCAAACCACCTCATC
LOC_Os07g07530
Os.54674.1.S1_at--1042--1231Chr07:3755842..3755881 (25 bp)
AGTTGAGTGGATACATCTGGCGCCT
LOC_Os07g07530
Os.54674.1.S1_at--844--9871Chr07:3755868..3755892 (25 bp)
TACATCTGGCGCCTGTGAAGTCAAG
LOC_Os07g07530
Os.54674.1.S1_at--222--2491Chr07:3755957..3755981 (25 bp)
AACAGCCCTGCAAACGATGATTCGC
LOC_Os07g07530
Os.54674.1.S1_at--938--6571Chr07:3755975..3755999 (25 bp)
GATTCGCTGTGATTATATTTCCTGG
LOC_Os07g07530
Os.54674.1.S1_at--1051--10191Chr07:3755988..3756012 (25 bp)
TATATTTCCTGGCTTGTCTTTTGCT
LOC_Os07g07530
Os.54674.1.S1_at--787--1351Chr07:3756029..3756053 (25 bp)
AGAGACTGCGTGATCCATGCTTTGG
LOC_Os07g07530
Os.54674.1.S1_at--419--10231Chr07:3756049..3756073 (25 bp)
TTTGGTTGATAGCTGGAATCCCCAG
LOC_Os07g07530
Os.54674.1.S1_at--1134--2712Chr07:3756130..3756154 (25 bp)
AAGCAGGGCGTAATGCCTTTTGTCC
LOC_Os07g07530
Target Sequence 
ATGTTCTCTCTCTAGTTACACTGTTATAATAAAGTTTTTTTTTCATTTAGGTTGTAATCCACAAGATTTTGAAGAAACAT
TCGAATATCTCAATGCATCAGGACACTCCTATCAATGATTTCAAATATGTACCCAGAAATGATCTATTTGATATTGATGA
ATATGGGCACTACATCCCATCCAGACCAAGATCTGAATTGCAAACCACCTCATCTCGGTTCAGGGGCAAAAGGAGCCAAT
CAAAGAGTACATCAAGCAGAGAGAAGCAACGGAACTTGTGAAAGTTGAGTGGATACATCTGGCGCCTGTGAAGTCAAGGG
GAGATTTGGATGCGTCAAGGGGACCGTTGCTTGCCAGCATCCGCGAGATAGGAGATCATTGCAACAGCCCTGCAAACGAT
GATTCGCTGTGATTATATTTCCTGGCTTGTCTTTTGCTGTGCCAGCAGCCCCTGAGAGACTGCGTGATCCATGCTTTGGT
TGATAGCTGGAATCCCCAGCAGATGTTTTCTTTTGTTTCTCTAGACTATATATGAACTCTTATGCTTTCAAGAAAAAGCA
GGGCGTAATGCCTTTTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis