Browse Element(s) Details


Os.20555.1.S1_at

Description gb:AK100663.1
DB_XREF= gi:32985872
TID=Os.20555.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112C11, full insert sequence.
FL= gb:AK066357.1 gb:AK100663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0756011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07530Os.54674.1.S1_at11/117+3752692..3756154expressed protein
LOC_Os07g07530Os.29072.1.S1_at3/117+3752692..3756154expressed protein
LOC_Os07g07540Os.2422.1.S1_a_at11/117+3758223..3760268SHOOT1 protein, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_x_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07560Os.20555.1.S1_at11/117+3771600..3778097protein kinase family protein, putative, expressed
LOC_Os07g07570OsAffx.5243.1.S1_at11/117+3784891..3785235hypothetical protein
LOC_Os07g07580Os.10848.1.A1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_at11/117+3795645..3799065root hairless 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20555.1.S1_at--556--291Chr07:3777798..3777822 (25 bp)
ATAGCATCGATCTGCTTCGGGCGAA
LOC_Os07g07560
Os.20555.1.S1_at--600--9051Chr07:3777810..3777834 (25 bp)
TGCTTCGGGCGAACCGTCTGTTGAC
LOC_Os07g07560
Os.20555.1.S1_at--364--3911Chr07:3777846..3777870 (25 bp)
CTGGCTGCCTTCCATTGAAGTTGAA
LOC_Os07g07560
Os.20555.1.S1_at--1094--6651Chr07:3777865..3777889 (25 bp)
GTTGAAGCGATTGCCATTCGAGAGA
LOC_Os07g07560
Os.20555.1.S1_at--510--7931Chr07:3777913..3777937 (25 bp)
GGATTCGCATGATCATTGGGCTAGG
LOC_Os07g07560
Os.20555.1.S1_at--314--6831Chr07:3777949..3777973 (25 bp)
GTTTCGGTATTTTGCAACTGTAAAG
LOC_Os07g07560
Os.20555.1.S1_at--363--2291Chr07:3777974..3777998 (25 bp)
AAATGTTGTATTACCGGATGCCGGC
LOC_Os07g07560
Os.20555.1.S1_at--149--5411Chr07:3778022..3778046 (25 bp)
GAAGCTAACACATTCTTGCATGTTG
LOC_Os07g07560
Os.20555.1.S1_at--87--6671Chr07:3778043..3778067 (25 bp)
GTTGAAATCGATATCTCTGCATTTT
LOC_Os07g07560
Os.20555.1.S1_at--1131--9051Chr07:3778060..3778084 (25 bp)
TGCATTTTTATCATACGTTCTCCCG
LOC_Os07g07560
Os.20555.1.S1_at--910--411Chr07:3778069..3778093 (25 bp)
ATCATACGTTCTCCCGATGTTTCTT
LOC_Os07g07560
Target Sequence 
ATAGCATCGATCTGCTTCGGGCGAACCGTCTGTTGACGGTGTGGCTGGCTGGCTGCCTTCCATTGAAGTTGAAGCGATTG
CCATTCGAGAGATGAGGAGATCTGGAGATGGAAGAGGATTCGCATGATCATTGGGCTAGGGAGCATTAGAAGTTTCGGTA
TTTTGCAACTGTAAAGAAATGTTGTATTACCGGATGCCGGCCTTGTGGGCCTTTTTCCATAAAAGAAGCTAACACATTCT
TGCATGTTGAAATCGATATCTCTGCATTTTTATCATACGTTCTCCCGATGTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis