Browse Element(s) Details


OsAffx.5243.1.S1_at

Description tigr:9635.m00705
TID=OsAffx.5243.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0757011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07540Os.2422.1.S1_a_at11/117+3758223..3760268SHOOT1 protein, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_x_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07560Os.20555.1.S1_at11/117+3771600..3778097protein kinase family protein, putative, expressed
LOC_Os07g07570OsAffx.5243.1.S1_at11/117+3784891..3785235hypothetical protein
LOC_Os07g07580Os.10848.1.A1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07590OsAffx.16138.1.S1_at10/117+3803330..3804247hypothetical protein
LOC_Os07g07600OsAffx.13097.1.S1_s_at11/117+3804984..3810748hypothetical protein
LOC_Os07g07600Os.46613.1.S2_at4/117+3804984..3810748hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5243.1.S1_at--707--5971Chr07:3785166..3785190 (25 bp)
GAGACCAGGGAGCACAATGTCGTAT
LOC_Os07g07570
OsAffx.5243.1.S1_at--208--5951Chr07:3785157..3785181 (25 bp)
GAGCACAATGTCGTATTCCTCTCAG
LOC_Os07g07570
OsAffx.5243.1.S1_at--264--2991Chr07:3785151..3785175 (25 bp)
AATGTCGTATTCCTCTCAGCGCCCA
LOC_Os07g07570
OsAffx.5243.1.S1_at--273--9231Chr07:3785125..3785149 (25 bp)
TCCATTATCCGCAGCAACAAGGAGA
LOC_Os07g07570
OsAffx.5243.1.S1_at--1037--5411Chr07:3785102..3785126 (25 bp)
GAAGCCGAGTATGCTGTTGTCCGCA
LOC_Os07g07570
OsAffx.5243.1.S1_at--360--1191Chr07:3785095..3785119 (25 bp)
AGTATGCTGTTGTCCGCAGGGCCGA
LOC_Os07g07570
OsAffx.5243.1.S1_at--557--6151Chr07:3785072..3785096 (25 bp)
GAGGTCCTCGCTCCAGGGATCTGGC
LOC_Os07g07570
OsAffx.5243.1.S1_at--451--10751Chr07:3784988..3785012 (25 bp)
TTGACCGCCCAGATCTGGAGGCTGG
LOC_Os07g07570
OsAffx.5243.1.S1_at--404--9431Chr07:3784951..3784975 (25 bp)
TCGGGAGCCTGGAGGCCCGCTACTT
LOC_Os07g07570
OsAffx.5243.1.S1_at--1113--6211Chr07:3784940..3784964 (25 bp)
GAGGCCCGCTACTTGGTGCCTTGGT
LOC_Os07g07570
OsAffx.5243.1.S1_at--924--4431Chr07:3784923..3784947 (25 bp)
GCCTTGGTGTCCTCCGTCTGGTGGA
LOC_Os07g07570
Target Sequence 
GAGACCAGGGAGCACAATGTCGTATTCCTCTCAGCGCCCACTCCATTATCCGCAGCAACAAGGAGAAGCCGAGTATGCTG
TTGTCCGCAGGGCCGAGGTCCTCGCTCCAGGGATCTGGCGGCTGGCCGCCCGCCGTCGTCGGGAGCCGAGGGGGTCCGTT
GCCTAGTGCCCTCGCCGCTTGACCGCCCAGATCTGGAGGCTGGCCATCCGCCGCCTCGGGAGCCTGGAGGCCCGCTACTT
GGTGCCTTGGTGTCCTCCGTCTGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis