Browse Element(s) Details


OsAffx.16138.1.S1_at

Description tigr:9635.m00708
TID=OsAffx.16138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0759010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07570OsAffx.5243.1.S1_at11/117+3784891..3785235hypothetical protein
LOC_Os07g07580Os.10848.1.A1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07590OsAffx.16138.1.S1_at10/117+3803330..3804247hypothetical protein
LOC_Os07g07600OsAffx.13097.1.S1_s_at11/117+3804984..3810748hypothetical protein
LOC_Os07g07600Os.46613.1.S2_at4/117+3804984..3810748hypothetical protein
LOC_Os07g07610Os.20376.1.S1_at11/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07610Os.40201.1.S1_at1/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07620OsAffx.16139.1.S1_at11/117+3816400..3819018exostosin family protein, putative, expressed
LOC_Os07g07630OsAffx.28329.1.S1_at10/117+3821023..3822292hypothetical protein
LOC_Os07g07640OsAffx.28330.1.S1_at7/117+3823496..3823900hypothetical protein
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16138.1.S1_at--19--5071Chr07:3804186..3804210 (25 bp)
GCAGCTTGCTGGAAGAAGGCCGTTC
LOC_Os07g07590
OsAffx.16138.1.S1_at--237--4031Chr07:3804104..3804128 (25 bp)
CGTTGCCCAGCCAAAACACGGGAGA
LOC_Os07g07590
OsAffx.16138.1.S1_at--883--5951Chr07:3804070..3804094 (25 bp)
GAGAATCGGTGGAAGCCTACCCATG
LOC_Os07g07590
OsAffx.16138.1.S1_at--1058--9151NONE
TGCGCGTAGCTGTGTGGTTCTTCAA
NONE
OsAffx.16138.1.S1_at--377--7891Chr07:3803496..3803520 (25 bp)
GGTTCTTCAACACCGTTAGTCTCGT
LOC_Os07g07590
OsAffx.16138.1.S1_at--801--10431Chr07:3803481..3803505 (25 bp)
TTAGTCTCGTGCTGTTTGGGATCGT
LOC_Os07g07590
OsAffx.16138.1.S1_at--1030--6211Chr07:3803462..3803486 (25 bp)
GATCGTCGTTGTGAAGGTAGTTCCA
LOC_Os07g07590
OsAffx.16138.1.S1_at--850--8991Chr07:3803451..3803475 (25 bp)
TGAAGGTAGTTCCACACTGCAAGAC
LOC_Os07g07590
OsAffx.16138.1.S1_at--944--8551Chr07:3803424..3803448 (25 bp)
TGGAGGAGGTGTTTGCATGCATTCT
LOC_Os07g07590
OsAffx.16138.1.S1_at--578--10271Chr07:3803413..3803437 (25 bp)
TTTGCATGCATTCTCGCTATACTCA
LOC_Os07g07590
OsAffx.16138.1.S1_at--999--311Chr07:3803395..3803419 (25 bp)
ATACTCACCGTCCTTGGGATACTAA
LOC_Os07g07590
Target Sequence 
GCAGCTTGCTGGAAGAAGGCCGTTCCGGCGTGGAACGGGAGCCGCCGCCGACGACCATCACGGCGGCGGAAGTCGTCGCC
GCCGTTGCCCAGCCAAAACACGGGAGAGTTGATACTGAGAATCGGTGGAAGCCTACCCATGCCCTCGCCTGCATGCGCGT
AGCTGTGTGGTTCTTCAACACCGTTAGTCTCGTGCTGTTTGGGATCGTCGTTGTGAAGGTAGTTCCACACTGCAAGACCA
TGGAGGAGGTGTTTGCATGCATTCTCGCTATACTCACCGTCCTTGGGATACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis