Browse Element(s) Details


OsAffx.16139.1.S1_at

Description tigr:9635.m00711
TID=OsAffx.16139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0762011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07580Os.10848.1.A1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07590OsAffx.16138.1.S1_at10/117+3803330..3804247hypothetical protein
LOC_Os07g07600OsAffx.13097.1.S1_s_at11/117+3804984..3810748hypothetical protein
LOC_Os07g07600Os.46613.1.S2_at4/117+3804984..3810748hypothetical protein
LOC_Os07g07610Os.20376.1.S1_at11/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07610Os.40201.1.S1_at1/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07620OsAffx.16139.1.S1_at11/117+3816400..3819018exostosin family protein, putative, expressed
LOC_Os07g07630OsAffx.28329.1.S1_at10/117+3821023..3822292hypothetical protein
LOC_Os07g07640OsAffx.28330.1.S1_at7/117+3823496..3823900hypothetical protein
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein
LOC_Os07g07670OsAffx.16140.1.S1_at11/117+3841927..3842743expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16139.1.S1_at--996--2991Chr07:3816916..3816940 (25 bp)
AATGAGGCATCTACTCGCACTGGAA
LOC_Os07g07620
OsAffx.16139.1.S1_at--416--771Chr07:3816872..3816896 (25 bp)
ATGTCCTGGCATCAAATCTCTACTC
LOC_Os07g07620
OsAffx.16139.1.S1_at--343--3591Chr07:3816761..3816785 (25 bp)
CATTTCATGGCAACTCTATTCACTC
LOC_Os07g07620
OsAffx.16139.1.S1_at--972--10211Chr07:3816745..3816769 (25 bp)
TATTCACTCATTTTTCGCACGGGAT
LOC_Os07g07620
OsAffx.16139.1.S1_at--460--9371Chr07:3816683..3816707 (25 bp)
TCGACGTGCTAATCCTTGAGTGCAT
LOC_Os07g07620
OsAffx.16139.1.S1_at--842--6191Chr07:3816598..3816622 (25 bp)
GAGGCACTTCCTGATGTACCATAGC
LOC_Os07g07620
OsAffx.16139.1.S1_at--1160--4411Chr07:3816561..3816585 (25 bp)
GCCATGTATGGCCTTCTAATGTCAG
LOC_Os07g07620
OsAffx.16139.1.S1_at--247--2751Chr07:3816510..3816534 (25 bp)
AAGAACGTCCGCATGTGTGGTGATT
LOC_Os07g07620
OsAffx.16139.1.S1_at--409--6591Chr07:3816489..3816513 (25 bp)
GATTGCCACTCATTCCTGGAGTATA
LOC_Os07g07620
OsAffx.16139.1.S1_at--367--3911Chr07:3816474..3816498 (25 bp)
CTGGAGTATACTTCTGCAGCTACCG
LOC_Os07g07620
OsAffx.16139.1.S1_at--1007--8111Chr07:3816430..3816454 (25 bp)
GGACTCGGCTGGGTTTCATATTTTC
LOC_Os07g07620
Target Sequence 
AATGAGGCATCTACTCGCACTGGAACCACAGGATCCATCCACATATGTCCTGGCATCAAATCTCTACTCAGAATCAGCAA
GATGGCAATGCTCTGAGAGCACAAGGCTGAAGATGCGTGAAAAGGGTATGCGTAAGATTCCAGCAAGGAGCTGGACATTT
CATGGCAACTCTATTCACTCATTTTTCGCACGGGATAGGTCACATCCCCAGTCCAAGGACATCTACGCTGGCCTCGACGT
GCTAATCCTTGAGTGCATGAAGGCTGGGTATGAACCGGACACCACCTTCGTGCTACACGACGTCGAGGAATACCAGAAGA
GGCACTTCCTGATGTACCATAGCGTGAAGCTAGCTGCCATGTATGGCCTTCTAATGTCAGGACATGGTGAAACCATCCGC
GTCGTGAAGAACGTCCGCATGTGTGGTGATTGCCACTCATTCCTGGAGTATACTTCTGCAGCTACCGGTAAAGAGATCTT
GGTCAGGGACTCGGCTGGGTTTCATATTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis