Browse Element(s) Details


Os.40201.1.S1_at

Description gb:AK111924.1
DB_XREF= gi:37988587
TID=Os.40201.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.40201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C03, full insert sequence.
FL= gb:AK111924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3041011/11ubiquitin activating enzyme, putative, expressed
LOC_Os07g076101/11DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30390OsAffx.29313.1.S1_at1/1111+17155172..17162200transposon protein, putative, Mutator sub-class
LOC_Os11g30400OsAffx.31228.1.S1_at8/1111+17162644..17166856hypothetical protein
LOC_Os11g30400Os.10046.1.S1_at1/1111+17162644..17166856hypothetical protein
LOC_Os11g30410Os.40201.1.S1_at11/1111+17167767..17173977ubiquitin activating enzyme, putative, expressed
LOC_Os11g30419OsAffx.13875.1.S1_at1/1111+17183216..17184904NA
LOC_Os11g30430NANA11+17192137..17193113expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0016925biological_processprotein sumoylation
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0019948molecular_functionSUMO activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40201.1.S1_at--863--9691Chr11:17172403..17172427 (25 bp)
TCACTTTCTGATCGACCTGCAGTTT
LOC_Os11g30410
Os.40201.1.S1_at--685--1111Chr11:17172543..17172567 (25 bp)
AGTGAGTCTCAAATTCCTACTGCTC
LOC_Os11g30410
Os.40201.1.S1_at--131--4811Chr11:17172564..17172588 (25 bp)
GCTCTCCTGGAACGGCTTTTAGCAG
LOC_Os11g30410
Os.40201.1.S1_at--87--2732Chr11:17172597..17172621 (25 bp)
AAGCAACATCCTCCTGTATGTGCAA
LOC_Os11g30410
Os.40201.1.S1_at--920--3031Chr11:17172620..17172644 (25 bp)
AATCCTTGGCGGCATTCTTGGTCAG
LOC_Os11g30410
Os.40201.1.S1_at--799--9971Chr11:17173625..17173649 (25 bp)
TATCTGGTAAGGGTGATCCGATCAA
LOC_Os11g30410
Os.40201.1.S1_at--731--1451Chr11:17173649..17173673 (25 bp)
AGAATTTCTTCTATTACGACGCCGC
LOC_Os11g30410
Os.40201.1.S1_at--363--1851Chr11:17173664..17173688 (25 bp)
ACGACGCCGCTGATGGTAAAGGGAT
LOC_Os11g30410
Os.40201.1.S1_at--306--2891Chr11:17173682..17173706 (25 bp)
AAGGGATCGCTGAAGACATTCCTCC
LOC_Os11g30410
Os.40201.1.S1_at--525--5731Chr11:17173717..17173741 (25 bp)
GACTGAACCAGTTAACTGCTCGACT
LOC_Os11g30410
Os.40201.1.S1_at--483--10511Chr11:17173757..17173781 (25 bp)
TTCACTAATCCCTGTACCCATTAAT
LOC_Os11g30410
Target Sequence 
TCACTTTCTGATCGACCTGCAGTTTTGGCTCTGAGGAAGGACATGTGTGATAAAATGTCTTTAAGTGAGTCTCAAATTCC
TACTGCTCTCCTGGAACGGCTTTTAGCAGCTNGNAAGAAGCAACATCCTCCTGTATGTGCAATCCTTGGCGGCATTCTTG
GTCAGGAGGTGATTAAGTCAATATCTGGTAAGGGTGATCCGATCAAGAATTTCTTCTATTACGACGCCGCTGATGGTAAA
GGGATCGCTGAAGACATTCCTCCCCTTTCTTCAGACTGAACCAGTTAACTGCTCGACTCCCATTCAGCCTGGCTTCACTA
ATCCCTGTACCCATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis