Browse Element(s) Details


Os.38358.1.S1_x_at

Description gb:AK103352.1
DB_XREF= gi:32988561
TID=Os.38358.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126I17, full insert sequence.
FL= gb:AK103352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0758011/11root hairless 1, putative, expressed
LOC_Os06g513807/11root hairless 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07560Os.20555.1.S1_at11/117+3771600..3778097protein kinase family protein, putative, expressed
LOC_Os07g07570OsAffx.5243.1.S1_at11/117+3784891..3785235hypothetical protein
LOC_Os07g07580Os.10848.1.A1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07590OsAffx.16138.1.S1_at10/117+3803330..3804247hypothetical protein
LOC_Os07g07600OsAffx.13097.1.S1_s_at11/117+3804984..3810748hypothetical protein
LOC_Os07g07600Os.46613.1.S2_at4/117+3804984..3810748hypothetical protein
LOC_Os07g07610Os.20376.1.S1_at11/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07610Os.40201.1.S1_at1/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07620OsAffx.16139.1.S1_at11/117+3816400..3819018exostosin family protein, putative, expressed
LOC_Os07g07630OsAffx.28329.1.S1_at10/117+3821023..3822292hypothetical protein
LOC_Os07g07640OsAffx.28330.1.S1_at7/117+3823496..3823900hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38358.1.S1_x_at--369--5152Chr07:3798249..3798273 (25 bp)
GCAACGATCTATCAGCTTTTCTTTA
LOC_Os07g07580
Os.38358.1.S1_x_at--901--1552Chr07:3798262..3798286 (25 bp)
AGCTTTTCTTTAACTGAGTACATCA
LOC_Os07g07580
Os.38358.1.S1_x_at--828--3551Chr07:3798282..3798306 (25 bp)
CATCAGTACATGTTAGTGTTCTTCA
LOC_Os07g07580
Os.38358.1.S1_x_at--739--5391Chr07:3798310..3798334 (25 bp)
GAAGCTGACAATTGTATTTACATGG
LOC_Os07g07580
Os.38358.1.S1_x_at--886--9872Chr07:3798328..3798352 (25 bp)
TACATGGATGTAGCTGGCAGAAGTC
LOC_Os07g07580
Os.38358.1.S1_x_at--239--3172Chr07:3798482..3798506 (25 bp)
AATTGAAGTGCTCTCAAGTTCCTCC
LOC_Os07g07580
Os.38358.1.S1_x_at--266--6691Chr07:3798499..3798646 (25 bp)
GTTCCTCCCAGGATAACAATGTGGA
LOC_Os07g07580
Os.38358.1.S1_x_at--254--6272Chr07:3798776..3798800 (25 bp)
GATGTGTTTGAGGAGCTTAGGTTCT
LOC_Os07g07580
Os.38358.1.S1_x_at--488--3571Chr07:3798828..3798852 (25 bp)
CATAGTCTTTTCATCGTACTGGTGA
LOC_Os07g07580
Os.38358.1.S1_x_at--18--2632Chr07:3798860..3798884 (25 bp)
AACCGAGAAGTGTGATCTGTTAGCA
LOC_Os07g07580
Os.38358.1.S1_x_at--232--6472Chr07:3798935..3798959 (25 bp)
GATAAATCATTGTTAGGGTCTGCAA
LOC_Os07g07580
Target Sequence 
GCAACGATCTATCAGCTTTTCTTTAACTGAGTACATCAGTACATGTTAGTGTTCTTCATATGAAGCTGACAATTGTATTT
ACATGGATGTAGCTGGCAGAAGTCAGAAAAAGAGAAAAACACAGGTAGAAGATGACGAAATTGAAGTGCTCTCAAGTTCC
TCCCAGGATAACAATGTGGACGATGATAGCGATGAAGACTGGGCTGAGTGATGTGCAGCTGAAGTTGAAAGGAATGTAGC
ACNCGGTGATGAAGAGTGAAGGATGCAAGATTGTGGGCAATTGTTTNCTTTTGGGGCAATATCNCAATTGATGTGTTTGA
GGAGCTTAGGTTCTGNCCTGNCCATTGATGAGATATATCATCATAGTCTTTTCATCGTACTGGTGAAATTGAAAACCGAG
AAGTGTGATCTGTTAGCACTAGATTTATTATTTATTTGACTTGTTGTAATGTAACATAAACAAGAGCTGATAAATCATTG
TTAGGGTCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38358.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis