Browse Element(s) Details


Os.20376.1.S1_at

Description gb:AK068132.1
DB_XREF= gi:32978150
TID=Os.20376.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013053F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131J17, full insert sequence.
FL= gb:AK068132.1 gb:AK099622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0761011/11DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07580Os.10848.1.A1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_x_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07580Os.38358.1.S1_at11/117+3795645..3799065root hairless 1, putative, expressed
LOC_Os07g07590OsAffx.16138.1.S1_at10/117+3803330..3804247hypothetical protein
LOC_Os07g07600OsAffx.13097.1.S1_s_at11/117+3804984..3810748hypothetical protein
LOC_Os07g07600Os.46613.1.S2_at4/117+3804984..3810748hypothetical protein
LOC_Os07g07610Os.20376.1.S1_at11/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07610Os.40201.1.S1_at1/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07620OsAffx.16139.1.S1_at11/117+3816400..3819018exostosin family protein, putative, expressed
LOC_Os07g07630OsAffx.28329.1.S1_at10/117+3821023..3822292hypothetical protein
LOC_Os07g07640OsAffx.28330.1.S1_at7/117+3823496..3823900hypothetical protein
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20376.1.S1_at--733--7391Chr07:3813301..3813325 (25 bp)
GTGAGGACCACACCATTGGCAACAT
LOC_Os07g07610
Os.20376.1.S1_at--1148--2371Chr07:3813164..3813188 (25 bp)
AAACGTCCTCTTTGCTGGTTATAAG
LOC_Os07g07610
Os.20376.1.S1_at--916--10271Chr07:3813154..3813178 (25 bp)
TTTGCTGGTTATAAGCTCCCTCATC
LOC_Os07g07610
Os.20376.1.S1_at--1123--531Chr07:3813132..3813156 (25 bp)
ATCCCCTTCAGTACAAGATCCTTGT
LOC_Os07g07610
Os.20376.1.S1_at--78--7111Chr07:3813029..3813093 (25 bp)
GTCAGGGTCCATACTGCAAACCAGT
LOC_Os07g07610
Os.20376.1.S1_at--502--3731Chr07:3812998..3813022 (25 bp)
CTACTCAAGCGTACACACAGGCAAT
LOC_Os07g07610
Os.20376.1.S1_at--563--7951Chr07:3812537..3812561 (25 bp)
GGATACTAGGCCAACACTCCTTAAA
LOC_Os07g07610
Os.20376.1.S1_at--231--4851Chr07:3812455..3812479 (25 bp)
GCTACTATGCTGATCAATGAACTCT
LOC_Os07g07610
Os.20376.1.S1_at--271--6751Chr07:3812392..3812416 (25 bp)
GTTCATCCTGATGCATTTCTGTTGT
LOC_Os07g07610
Os.20376.1.S1_at--1005--191Chr07:3812378..3812402 (25 bp)
ATTTCTGTTGTCTGTGCTTGGAGCA
LOC_Os07g07610
Os.20376.1.S1_at--623--8731Chr07:3812338..3812362 (25 bp)
TGTCATCTCTGAACTGCCATTGCAT
LOC_Os07g07610
Target Sequence 
GTGAGGACCACACCATTGGCAACATCCTCCGCATGCAGCTCCACAGGGACCCAAACGTCCTCTTTGCTGGTTATAAGCTC
CCTCATCCCCTTCAGTACAAGATCCTTGTCAGGGTCCATACTGCAAACCAGTCCACCCCTACTCAAGCGTACACACAGGC
AATCAATGATTTAGACAAGGAGCTTGAGAATNTCAAGCAAGCTTTTGAGGATGAGAAGATCCGCTACGAGGAAAGGCCTA
AGCAGGGATACTAGGCCAACACTCCTTAAAATGCAGAACCTCTGTTGATGTTAGATNTGATGCCTGAGCATTAGTAGAAA
AAAAAATGCTACTATGCTGATCAATGAACTCTTTTAAGAAACTTGTTTATGCTTAAACTCGTACAACGCAGTTCATCCTG
ATGCATTTCTGTTGTCTGTGCTTGGAGCATGCTCTATTAAGACTTGTCATCTCTGAACTGCCATTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis