Browse Element(s) Details


Os.57365.1.S1_at

Description gb:AK111383.1
DB_XREF= gi:32996592
TID=Os.57365.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B09, full insert sequence.
FL= gb:AK111383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4001011/11expressed protein
LOC_Os03g4623010/11retrotransposon protein, putative, unclassified
LOC_Os03g1511010/11expressed protein
LOC_Os08g194809/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g150209/11hypothetical protein
LOC_Os07g075201/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39960Os.16025.1.S1_s_at11/116+23772210..23775741bZIP transcription factor family protein, expressed
LOC_Os06g39960OsAffx.28017.1.S1_at9/116+23772210..23775741bZIP transcription factor family protein, expressed
LOC_Os06g39970OsAffx.15853.1.S1_x_at11/116+23776682..23779891Cellulose synthase family protein
LOC_Os06g39970OsAffx.15853.1.S1_at11/116+23776682..23779891Cellulose synthase family protein
LOC_Os06g39980NANA6+23785620..23787341retrotransposon protein, putative, unclassified
LOC_Os06g39990NANA6+23788041..23790187retrotransposon protein, putative, unclassified
LOC_Os06g40000Os.54287.1.S1_at1/116+23790731..23794097hypothetical protein
LOC_Os06g40010Os.57365.1.S1_at11/116+23794589..23795132expressed protein
LOC_Os06g40010OsAffx.28452.1.S1_x_at3/116+23794589..23795132expressed protein
LOC_Os06g40020Os.54689.1.S1_x_at11/116+23805011..23810039DEAD-box protein 3, Y-chromosomal, putative, expressed
LOC_Os06g40020Os.5813.1.S1_at1/116+23805011..23810039DEAD-box protein 3, Y-chromosomal, putative, expressed
LOC_Os06g40030Os.8136.1.A1_at11/116+23811380..23814107D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57365.1.S1_at--14--153Chr06:23794917..23794941 (25 bp)
ATTACAGCCTGCACGGCTCCTGTTC
LOC_Os06g40010
Os.57365.1.S1_at--92--4211Chr06:23794972..23794996 (25 bp)
CCCCTCACGAGTGGTTAATCGAGCA
LOC_Os06g40010
Os.57365.1.S1_at--1123--9755Chr08:11633943..11633967 (25 bp)
TAATCGAGCAGTGGCTACTCTCGTG
LOC_Os08g19480
Os.57365.1.S1_at--203--9916Chr08:11633958..11633982 (25 bp)
TACTCTCGTGTCTTCTGTTAGGATC
LOC_Os08g19480
Os.57365.1.S1_at--645--7455Chr08:11633965..11633989 (25 bp)
GTGTCTTCTGTTAGGATCGAGCATA
LOC_Os08g19480
Os.57365.1.S1_at--120--995Chr08:11633977..11634001 (25 bp)
AGGATCGAGCATACCGTATTCGGGA
LOC_Os08g19480
Os.57365.1.S1_at--23--1555Chr08:11633984..11634008 (25 bp)
AGCATACCGTATTCGGGAGTGGTGT
LOC_Os08g19480
Os.57365.1.S1_at--988--6115Chr08:11634000..11634024 (25 bp)
GAGTGGTGTTGATTAGGAGCTTTTA
LOC_Os08g19480
Os.57365.1.S1_at--248--8075Chr08:11634015..11634039 (25 bp)
GGAGCTTTTATAGAATTCTCATTTA
LOC_Os08g19480
Os.57365.1.S1_at--702--5215Chr08:11634027..11634051 (25 bp)
GAATTCTCATTTATTGATTGTCCAA
LOC_Os08g19480
Os.57365.1.S1_at--112--6615Chr08:11634042..11634066 (25 bp)
GATTGTCCAATCATGGTTGCCAAAA
LOC_Os08g19480
Target Sequence 
ATTACAGCCTGCACGGCTCCTGTTCGACGAATTGCCTGCGAGGGGCACTCGATTCCCCCTCACGAGTGGTTAATCGAGCA
GTGGCTACTCTCGTGTCTTCTGTTAGGATCGAGCATACCGTATTCGGGAGTGGTGTTGATTAGGAGCTTTTATAGAATTC
TCATTTATTGATTGTCCAATCATGGTTGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis