Browse Element(s) Details

Os.54689.1.S1_x_at

Description

gb:AK106474.1
DB_XREF= gi:32991683
TID=Os.54689.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-C03, full insert sequence.
FL= gb:AK106474.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g40020	11/11	DEAD-box protein 3, Y-chromosomal, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39980	NA	NA	6	+	23785620..23787341	retrotransposon protein, putative, unclassified
LOC_Os06g39990	NA	NA	6	+	23788041..23790187	retrotransposon protein, putative, unclassified
LOC_Os06g40000	Os.54287.1.S1_at	1/11	6	+	23790731..23794097	hypothetical protein
LOC_Os06g40010	Os.57365.1.S1_at	11/11	6	+	23794589..23795132	expressed protein
LOC_Os06g40010	OsAffx.28452.1.S1_x_at	3/11	6	+	23794589..23795132	expressed protein
LOC_Os06g40020	Os.54689.1.S1_x_at	11/11	6	+	23805011..23810039	DEAD-box protein 3, Y-chromosomal, putative, expressed
LOC_Os06g40020	Os.5813.1.S1_at	1/11	6	+	23805011..23810039	DEAD-box protein 3, Y-chromosomal, putative, expressed
LOC_Os06g40030	Os.8136.1.A1_at	11/11	6	+	23811380..23814107	D-mannose binding lectin family protein, expressed
LOC_Os06g40040	Os.6721.1.S1_x_at	10/11	6	+	23820377..23822282	expressed protein
LOC_Os06g40040	Os.6721.1.S1_at	10/11	6	+	23820377..23822282	expressed protein
LOC_Os06g40050	Os.19230.2.S1_at	11/11	6	+	23822718..23826299	Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os06g40050	Os.19230.1.A1_at	11/11	6	+	23822718..23826299	Brittle-1 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008026	molecular_function	ATP-dependent helicase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54689.1.S1_x_at--464--855	1	Chr06:23809578..23809602 (25 bp)	TGGAGACCCCTACCGAGCAAGTGCT	LOC_Os06g40020
Os.54689.1.S1_x_at--918--37	1	Chr06:23809648..23809672 (25 bp)	ATCAACGCCTCTGGCTGGGACTAAG	LOC_Os06g40020
Os.54689.1.S1_x_at--65--389	1	Chr06:23809662..23809686 (25 bp)	CTGGGACTAAGCTGGAGCTCTCGGC	LOC_Os06g40020
Os.54689.1.S1_x_at--401--205	1	Chr06:23809696..23809720 (25 bp)	ACTTCTCAGTGCACATACCGTATAT	LOC_Os06g40020
Os.54689.1.S1_x_at--427--949	1	Chr06:23809780..23809804 (25 bp)	TCTGCTGCTCTTTTACCTTGTTGAT	LOC_Os06g40020
Os.54689.1.S1_x_at--312--1035	1	Chr06:23809791..23809815 (25 bp)	TTTACCTTGTTGATCGCCTTGTCTC	LOC_Os06g40020
Os.54689.1.S1_x_at--765--443	1	Chr06:23809806..23809830 (25 bp)	GCCTTGTCTCGTCTGATATACCTAT	LOC_Os06g40020
Os.54689.1.S1_x_at--458--31	1	Chr06:23809823..23809847 (25 bp)	ATACCTATACAACGGTGGTGCACAG	LOC_Os06g40020
Os.54689.1.S1_x_at--84--777	1	Chr06:23809896..23809920 (25 bp)	GGTGACATTGTGGTGATCAGGCTTC	LOC_Os06g40020
Os.54689.1.S1_x_at--1098--39	1	Chr06:23809911..23809935 (25 bp)	ATCAGGCTTCACTTGTTGCTTAAAA	LOC_Os06g40020
Os.54689.1.S1_x_at--788--473	1	Chr06:23809963..23809987 (25 bp)	GCTGATCGACACTGCTATATTTACC	LOC_Os06g40020

Target Sequence

TGGAGACCCCTACCGAGCAAGTGCTCCACCCCCGCGGTACTACCCTTCGTACCCGATGGGCACGGCCGACATCAACGCCT
CTGGCTGGGACTAAGCTGGAGCTCTCGGCGTCGTCCTCACTTCTCAGTGCACATACCGTATATACTACCATGCCTAAAAT
TACTTAGTAGGGGAACCAAAATGGCGGTGGGCACGCCTGGTCTCTGCTGCTCTTTTACCTTGTTGATCGCCTTGTCTCGT
CTGATATACCTATACAACGGTGGTGCACAGAGGTATGTGGCTCTGTTGGGAAGTTGGGGTTTTGGCCAGAATGGTGGTGG
TGACATTGTGGTGATCAGGCTTCACTTGTTGCTTAAAACTTGTTACTATGTTATTGTAAGTGGCAGCTGATCGACACTGC
TATATTTACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis