Browse Element(s) Details


Os.19230.2.S1_at

Description gb:CB644087
DB_XREF= gi:29639078
DB_XREF=OSJNEb05C07.f
CLONE=OSJNEb05C07
TID=Os.19230.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19230 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_194966.1 (A.thaliana) adenylate translocator
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4005011/11Brittle-1 protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40020Os.54689.1.S1_x_at11/116+23805011..23810039DEAD-box protein 3, Y-chromosomal, putative, expressed
LOC_Os06g40020Os.5813.1.S1_at1/116+23805011..23810039DEAD-box protein 3, Y-chromosomal, putative, expressed
LOC_Os06g40030Os.8136.1.A1_at11/116+23811380..23814107D-mannose binding lectin family protein, expressed
LOC_Os06g40040Os.6721.1.S1_x_at10/116+23820377..23822282expressed protein
LOC_Os06g40040Os.6721.1.S1_at10/116+23820377..23822282expressed protein
LOC_Os06g40050Os.19230.2.S1_at11/116+23822718..23826299Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os06g40050Os.19230.1.A1_at11/116+23822718..23826299Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os06g40060Os.14852.1.A1_at10/116+23842286..23846139glycosyltransferase family 14 protein, putative, expressed
LOC_Os06g40070OsAffx.5067.1.S1_at10/116+23846664..23849966oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19230.2.S1_at--266--4411Chr06:23825994..23826013 (20 bp)
GCCACCTCGGGTTTTTTAAGTGCAG
LOC_Os06g40050
Os.19230.2.S1_at--508--4451Chr06:23825316..23825340 (25 bp)
GCCTTCACTGTGTGCTGTAGATTGA
LOC_Os06g40050
Os.19230.2.S1_at--171--2751Chr06:23825210..23825234 (25 bp)
AAGAAGCAGGGCTGGTCTGTCCCAC
LOC_Os06g40050
Os.19230.2.S1_at--1154--9271Chr06:23825173..23825197 (25 bp)
TCCGGTTCCCTTGGGATTTGCATGA
LOC_Os06g40050
Os.19230.2.S1_at--127--5611Chr06:23825147..23825171 (25 bp)
GACAAGGGCTTCTCTTTGAGCTTAC
LOC_Os06g40050
Os.19230.2.S1_at--250--9991Chr06:23825088..23825112 (25 bp)
TAGCGTCGGTCTCAAAGTGTCCACA
LOC_Os06g40050
Os.19230.2.S1_at--130--4991Chr06:23825031..23825055 (25 bp)
GCATGACTTCAAGATTCCGTTCGCT
LOC_Os06g40050
Os.19230.2.S1_at--875--91Chr06:23825018..23825042 (25 bp)
ATTCCGTTCGCTGATCATTGCATAA
LOC_Os06g40050
Os.19230.2.S1_at--32--9851Chr06:23824996..23825020 (25 bp)
TAAAGTATGTCTCCTCAGCAGTGGG
LOC_Os06g40050
Os.19230.2.S1_at--777--6951Chr06:23824971..23824995 (25 bp)
GTACCAAGTTCCTGGGACTGAGGCT
LOC_Os06g40050
Os.19230.2.S1_at--393--10751Chr06:23824864..23824888 (25 bp)
TTGGGAACCCACATTTGAGGCGGCT
LOC_Os06g40050
Target Sequence 
GCCACCTCGGGTTTTTTAAGTGCAGTCGCCCGCCTTCACTGTGTGCTGTAGATTGAGGCAAAAACATTTTCCAGGAGATG
GCAGCGACGATGGTGGCGATGTCGGCCAAGAGCAAGAACAGCGTGCTGACATTGGAGAAGAAGCAGGGCTGGTCTGTCCC
ACAACTTCCGGAGCTCCGGTTCCCTTGGGATTTGCATGAAGACAAGGGCTTCTCTTTGAGCTTACATGGCTCTGCCTCCC
CTCATGGTGGGCTGTTTGCTAGCGTCGGTCTCAAAGTGTCCACAGCTGCACCAGCAGTGGCACCCAGTCCTGCCGAGCAT
GACTTCAAGATTCCGTTCGCTGATCATTGCATAAAGTATGTCTCCTCAGCAGTGGGGTACCAAGTTCCTGGGACTGAGGC
TGAATCTGTCAATGAGGAAGNGGTGGTGGATGGCAAGGCTGTGAAGAAAGCCAAGAAACGTGGGCTGAAGCTGAAAATTA
AGATTGGGAACCCACATTTGAGGCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19230.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis