Browse Element(s) Details


Os.8136.1.A1_at

Description gb:AK111737.1
DB_XREF= gi:37988400
TID=Os.8136.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047K02, full insert sequence.
FL= gb:AK111737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4003011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39980NANA6+23785620..23787341retrotransposon protein, putative, unclassified
LOC_Os06g39990NANA6+23788041..23790187retrotransposon protein, putative, unclassified
LOC_Os06g40000Os.54287.1.S1_at1/116+23790731..23794097hypothetical protein
LOC_Os06g40010Os.57365.1.S1_at11/116+23794589..23795132expressed protein
LOC_Os06g40010OsAffx.28452.1.S1_x_at3/116+23794589..23795132expressed protein
LOC_Os06g40020Os.54689.1.S1_x_at11/116+23805011..23810039DEAD-box protein 3, Y-chromosomal, putative, expressed
LOC_Os06g40020Os.5813.1.S1_at1/116+23805011..23810039DEAD-box protein 3, Y-chromosomal, putative, expressed
LOC_Os06g40030Os.8136.1.A1_at11/116+23811380..23814107D-mannose binding lectin family protein, expressed
LOC_Os06g40040Os.6721.1.S1_x_at10/116+23820377..23822282expressed protein
LOC_Os06g40040Os.6721.1.S1_at10/116+23820377..23822282expressed protein
LOC_Os06g40050Os.19230.2.S1_at11/116+23822718..23826299Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os06g40050Os.19230.1.A1_at11/116+23822718..23826299Brittle-1 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8136.1.A1_at--214--9451Chr06:23811904..23811928 (25 bp)
TCGGAGTGGTCCTTCTAGAATTATT
LOC_Os06g40030
Os.8136.1.A1_at--312--5331Chr06:23811874..23811898 (25 bp)
GAAGTCGTGTTTCAGAATGGGCAAA
LOC_Os06g40030
Os.8136.1.A1_at--718--8971Chr06:23811825..23811849 (25 bp)
TGAAAAGGTCCTTCGGCGGGATGTT
LOC_Os06g40030
Os.8136.1.A1_at--279--6491Chr06:23811767..23811791 (25 bp)
GATAGCGAACGGTCATGGATCACTA
LOC_Os06g40030
Os.8136.1.A1_at--861--7951Chr06:23811751..23811775 (25 bp)
GGATCACTAACTTCATTGACTCGAG
LOC_Os06g40030
Os.8136.1.A1_at--869--6451Chr06:23811687..23811711 (25 bp)
GATCAAGTTGGCTGTTTCATGCATA
LOC_Os06g40030
Os.8136.1.A1_at--1022--2511Chr06:23811577..23811601 (25 bp)
AACTTACCTGTCCTGCATCAAAATG
LOC_Os06g40030
Os.8136.1.A1_at--394--8231Chr06:23811541..23811565 (25 bp)
GGCACATCAATGTAATACTCCCTCC
LOC_Os06g40030
Os.8136.1.A1_at--20--7071Chr06:23811530..23811554 (25 bp)
GTAATACTCCCTCCAGACGGAAATA
LOC_Os06g40030
Os.8136.1.A1_at--303--7631Chr06:23811495..23811519 (25 bp)
GGGACAGCTGAATTGACCTGCGCTC
LOC_Os06g40030
Os.8136.1.A1_at--670--1751Chr06:23811480..23811504 (25 bp)
ACCTGCGCTCAGTGCAATTTGCTTG
LOC_Os06g40030
Target Sequence 
TCGGAGTGGTCCTTCTAGAATTATTGAAGGGAAGTCGTGTTTCAGAATGGGCAAAAACTGAGGATGAAGATGATGAGGTT
GAAAAGGTCCTTCGGCGGGATGTTAGGATGCTGGCAGAGAATGTGAAGTTGCAGGAGGATAGCGAACGGTCATGGATCAC
TAACTTCATTGACTCGAGATTGAATGGCCAGTTCAACTACTTGCAAGCAAGAACAATGATCAAGTTGGCTGTTTCATGCA
TAGAAGAAGATAGAAGCAAAAGACCCACCATGGAGAATGTAGCGCAGATGCTTCTATCAGTTGATGAAGAAAATATCATT
ACATAGCAACTTACCTGTCCTGCATCAAAATGTAGAACCATTTGGCACATCAATGTAATACTCCCTCCAGACGGAAATAC
ATGTCTTTTGGGACAGCTGAATTGACCTGCGCTCAGTGCAATTTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8136.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis