Browse Element(s) Details


Os.14852.1.A1_at

Description gb:AK070134.1
DB_XREF= gi:32980158
TID=Os.14852.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043B05, full insert sequence.
FL= gb:AK070134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4006010/11glycosyltransferase family 14 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40040Os.6721.1.S1_x_at10/116+23820377..23822282expressed protein
LOC_Os06g40040Os.6721.1.S1_at10/116+23820377..23822282expressed protein
LOC_Os06g40050Os.19230.2.S1_at11/116+23822718..23826299Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os06g40050Os.19230.1.A1_at11/116+23822718..23826299Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os06g40060Os.14852.1.A1_at10/116+23842286..23846139glycosyltransferase family 14 protein, putative, expressed
LOC_Os06g40070OsAffx.5067.1.S1_at10/116+23846664..23849966oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os06g40080Os.20352.1.S1_at11/116+23852775..23857026heme oxygenase 1, putative, expressed
LOC_Os06g40090OsAffx.15855.1.S1_at11/116+23862816..23863503VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14852.1.A1_at--1061--5531Chr06:23845537..23845561 (25 bp)
GAAACTTGTCACAGGCTTGCTCACC
LOC_Os06g40060
Os.14852.1.A1_at--895--10691Chr06:23845553..23845577 (25 bp)
TTGCTCACCCAGGAAGGCTTTGATG
LOC_Os06g40060
Os.14852.1.A1_at--951--7991Chr06:23845643..23845667 (25 bp)
GGATGTTGCGCCATTAGCTAGTCAT
LOC_Os06g40060
Os.14852.1.A1_at--1053--6651Chr06:23845756..23845780 (25 bp)
GTTGAATCACCGTACAGGAGACCAC
LOC_Os06g40060
Os.14852.1.A1_at--633--9491Chr06:23845879..23845903 (25 bp)
TCTGCGCTGCGGGTTGTCCAAGATG
LOC_Os06g40060
Os.14852.1.A1_at--704--2791Chr06:23845898..23845922 (25 bp)
AAGATGGTCCATTATTCGTTCAGAA
LOC_Os06g40060
Os.14852.1.A1_at--433--2631Chr06:23845952..23845976 (25 bp)
AACCTGCAGCGCTTGAGATTTCGTT
LOC_Os06g40060
Os.14852.1.A1_at--1047--6871Chr06:23845977..23846001 (25 bp)
GTATTAACTTGGATTCTTCTGGGCA
LOC_Os06g40060
Os.14852.1.A1_at--285--9571Chr06:23845991..23846015 (25 bp)
TCTTCTGGGCAAACTGGCACATTTT
LOC_Os06g40060
Os.14852.1.A1_at--848--291Chr06:23846067..23846091 (25 bp)
ATAGCGAATTACTTGCTCCCTTTTC
LOC_Os06g40060
Os.14852.1.A1_at--985--4191NONE
CCCCTAGGGTGGGTATGCATACTAT
NONE
Target Sequence 
GAAACTTGTCACAGGCTTGCTCACCCAGGAAGGCTTTGATGACAAGCATTGCTTGTGAAACTTGCAGTAATATGATTCTG
GGGTAGGTTACACTATCAAAATTCGAGGATGTTGCGCCATTAGCTAGTCATCTACTAGCTGAAGAAGCAGCAGCACATAG
CATCAATTCCACATGGATGGAATGGTCAGATAGGTGATCTTTTTNNACACAAACCACTTGAGTTGAATCACCGTACAGGA
GACCACGGCCGTAGCACACGGAGATTATACAGCACTAATAGCTCATTAGGTTATGTTAGAGGATTATATCAGCCCCCAAC
CATTAATAATCTCTTCTTGATCTCTCTGCGCTGCGGGTTGTCCAAGATGGTCCATTATTCGTTCAGAAAATCACAGCACT
GACCAGATCAATTTGCCAACCTGCAGCGCTTGAGATTTCGTTGTATTAACTTGGATTCTTCTGGGCAAACTGGCACATTT
TGATTACANNACATGTATTCTTTGATTTCNTCTCCCTTTTCCCATTGCTGAGCATAGCGAATTACTTGCTCCCTTTTCTT
GCCCCTAGGGTGGGTATGCATACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14852.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis