Browse Element(s) Details


OsAffx.15855.1.S1_at

Description tigr:9634.m03844
TID=OsAffx.15855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4009011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40060Os.14852.1.A1_at10/116+23842286..23846139glycosyltransferase family 14 protein, putative, expressed
LOC_Os06g40070OsAffx.5067.1.S1_at10/116+23846664..23849966oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os06g40080Os.20352.1.S1_at11/116+23852775..23857026heme oxygenase 1, putative, expressed
LOC_Os06g40090OsAffx.15855.1.S1_at11/116+23862816..23863503VQ motif family protein, expressed
LOC_Os06g40110Os.6079.1.S1_at11/116+23872485..23873728RNA polymerase Rpc34 subunit family protein, expressed
LOC_Os06g40120Os.11840.1.S1_at11/116+23874414..23878968IDS4, putative, expressed
LOC_Os06g40130NANA6+23882434..23882859hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15855.1.S1_at--399--3931Chr06:23863357..23863381 (25 bp)
CGGCGTCGCGCAAGATCGGGAAATC
LOC_Os06g40090
OsAffx.15855.1.S1_at--778--2771Chr06:23863346..23863370 (25 bp)
AAGATCGGGAAATCGGCGGCGCATC
LOC_Os06g40090
OsAffx.15855.1.S1_at--153--3951Chr06:23863313..23863337 (25 bp)
CGGAAGCCGGTGATCATTTACATGG
LOC_Os06g40090
OsAffx.15855.1.S1_at--1135--1671Chr06:23863309..23863333 (25 bp)
AGCCGGTGATCATTTACATGGTGTC
LOC_Os06g40090
OsAffx.15855.1.S1_at--327--7411Chr06:23863304..23863328 (25 bp)
GTGATCATTTACATGGTGTCGCCCA
LOC_Os06g40090
OsAffx.15855.1.S1_at--67--6431Chr06:23863302..23863326 (25 bp)
GATCATTTACATGGTGTCGCCCAAG
LOC_Os06g40090
OsAffx.15855.1.S1_at--422--3351Chr06:23863271..23863295 (25 bp)
CACGTCGAGGCCCACGAGTTCATGT
LOC_Os06g40090
OsAffx.15855.1.S1_at--856--7211Chr06:23863268..23863292 (25 bp)
GTCGAGGCCCACGAGTTCATGTCGC
LOC_Os06g40090
OsAffx.15855.1.S1_at--673--891Chr06:23863264..23863288 (25 bp)
AGGCCCACGAGTTCATGTCGCTGGT
LOC_Os06g40090
OsAffx.15855.1.S1_at--775--4171Chr06:23863261..23863285 (25 bp)
CCCACGAGTTCATGTCGCTGGTGCA
LOC_Os06g40090
OsAffx.15855.1.S1_at--305--4271Chr06:23862910..23862934 (25 bp)
CCGGCTGGCTTCAGCACGTCGGCGA
LOC_Os06g40090
Target Sequence 
CGGCGTCGCGCAAGATCGGGAAATCGGCGGCGCATCAGCAGCAGCGGAAGCCGGTGATCATTTACATGGTGTCGCCCAAG
ATCATCCACGTCGAGGCCCACGAGTTCATGTCGCTGGTGCAGCGGCTCACCGGCCCGGGGGCCGGCGGCCGCGGGGCGAC
GGCGGCAAGAAGGCGGCGTCGTCGTCGCCGAGGGAGGCGCGCAGGGGGGCGCCGCCGCCCGCTCCGCGGCGCCGCGCTCA
AGGGCGAGGCCGCCGCCGCCGCGCCGCTCGTCTCCCCCGGCGCCGGCTGGCTTCAGCACGTCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis