Browse Element(s) Details


OsAffx.5067.1.S1_at

Description tigr:9634.m03842
TID=OsAffx.5067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY150406 putative quinone oxidoreductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4007010/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40040Os.6721.1.S1_x_at10/116+23820377..23822282expressed protein
LOC_Os06g40040Os.6721.1.S1_at10/116+23820377..23822282expressed protein
LOC_Os06g40050Os.19230.2.S1_at11/116+23822718..23826299Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os06g40050Os.19230.1.A1_at11/116+23822718..23826299Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os06g40060Os.14852.1.A1_at10/116+23842286..23846139glycosyltransferase family 14 protein, putative, expressed
LOC_Os06g40070OsAffx.5067.1.S1_at10/116+23846664..23849966oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os06g40080Os.20352.1.S1_at11/116+23852775..23857026heme oxygenase 1, putative, expressed
LOC_Os06g40090OsAffx.15855.1.S1_at11/116+23862816..23863503VQ motif family protein, expressed
LOC_Os06g40110Os.6079.1.S1_at11/116+23872485..23873728RNA polymerase Rpc34 subunit family protein, expressed
LOC_Os06g40120Os.11840.1.S1_at11/116+23874414..23878968IDS4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5067.1.S1_at--185--3251NONE
CAACGCCAAGGTTGACCTGCTGAAA
NONE
OsAffx.5067.1.S1_at--722--1531Chr06:23847498..23847522 (25 bp)
AGCTTGGATTCGATGACGCTTTCAA
LOC_Os06g40070
OsAffx.5067.1.S1_at--382--1491Chr06:23847024..23847470 (25 bp)
AGCACTGAAGAGATACTTTCCCGAC
LOC_Os06g40070
OsAffx.5067.1.S1_at--303--3671Chr06:23847009..23847033 (25 bp)
CTTTCCCGACGGTATTGACATCTAC
LOC_Os06g40070
OsAffx.5067.1.S1_at--183--10291Chr06:23846914..23846938 (25 bp)
TTTGCGGCGTCATCTCCGAGTACAC
LOC_Os06g40070
OsAffx.5067.1.S1_at--391--3911Chr06:23846858..23846882 (25 bp)
CTGGAGGTGATCTACAAGCGCATCA
LOC_Os06g40070
OsAffx.5067.1.S1_at--1095--9611Chr06:23846830..23846854 (25 bp)
TCAGAGGCTTCTTCGCCTGGGATTT
LOC_Os06g40070
OsAffx.5067.1.S1_at--642--171Chr06:23846809..23846833 (25 bp)
ATTTCCTGACGAGGTTCGCCGAGTT
LOC_Os06g40070
OsAffx.5067.1.S1_at--369--6071Chr06:23846789..23846813 (25 bp)
GAGTTCACCGGCGTCATCAGTGACT
LOC_Os06g40070
OsAffx.5067.1.S1_at--190--411Chr06:23846774..23846798 (25 bp)
ATCAGTGACTGGATCCGTCAGGGAA
LOC_Os06g40070
OsAffx.5067.1.S1_at--459--6191Chr06:23846735..23846759 (25 bp)
GAGGACATCTCCGACGGCCTGGAGA
LOC_Os06g40070
Target Sequence 
CAACGCCAAGGTTGACCTGCTGAAAAATAAGCTTGGATTCGATGACGCTTTCAACTATAAGGATGAGCCTGACATGAAAT
CAGCACTGAAGAGATACTTTCCCGACGGTATTGACATCTACTTTGACAATGTCGGTGGCGAGACACTAGAGGCGGCGCTG
GCGAACATGAACACCTACGGCCGCGTCGCCCTTTGCGGCGTCATCTCCGAGTACACCGACGCCGGCCACCGCGCCGTGCC
GGACCTGCTGGAGGTGATCTACAAGCGCATCACCATCAGAGGCTTCTTCGCCTGGGATTTCCTGACGAGGTTCGCCGAGT
TCACCGGCGTCATCAGTGACTGGATCCGTCAGGGAAAGGTCCAGGTGATCGAGGACATCTCCGACGGCCTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis