Browse Element(s) Details


OsAffx.15853.1.S1_at

Description tigr:9634.m03832
TID=OsAffx.15853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cellulose synthase catalytic subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3997011/11Cellulose synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39930NANA6+23747418..23753573retrotransposon protein, putative, unclassified
LOC_Os06g39940NANA6+23753901..23757420transposon protein, putative, unclassified
LOC_Os06g39950NANA6+23759287..23763196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39960Os.16025.1.S1_s_at11/116+23772210..23775741bZIP transcription factor family protein, expressed
LOC_Os06g39960OsAffx.28017.1.S1_at9/116+23772210..23775741bZIP transcription factor family protein, expressed
LOC_Os06g39970OsAffx.15853.1.S1_x_at11/116+23776682..23779891Cellulose synthase family protein
LOC_Os06g39970OsAffx.15853.1.S1_at11/116+23776682..23779891Cellulose synthase family protein
LOC_Os06g39980NANA6+23785620..23787341retrotransposon protein, putative, unclassified
LOC_Os06g39990NANA6+23788041..23790187retrotransposon protein, putative, unclassified
LOC_Os06g40000Os.54287.1.S1_at1/116+23790731..23794097hypothetical protein
LOC_Os06g40010Os.57365.1.S1_at11/116+23794589..23795132expressed protein
LOC_Os06g40010OsAffx.28452.1.S1_x_at3/116+23794589..23795132expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15853.1.S1_at--152--9431Chr06:23779325..23779349 (25 bp)
TCGGTCGCGCTCGAGCTGAGGTGGA
LOC_Os06g39970
OsAffx.15853.1.S1_at--1067--7411Chr06:23779427..23779451 (25 bp)
GTGTTCCAGGGCATCCTCAGCGCGT
LOC_Os06g39970
OsAffx.15853.1.S1_at--614--3751Chr06:23779442..23779466 (25 bp)
CTCAGCGCGTGCACCGGGATCGACG
LOC_Os06g39970
OsAffx.15853.1.S1_at--947--7331Chr06:23779450..23779474 (25 bp)
GTGCACCGGGATCGACGTCGCCTTC
LOC_Os06g39970
OsAffx.15853.1.S1_at--40--10591Chr06:23779472..23779496 (25 bp)
TTCTCCACGGAGACGGCAGCTTCGC
LOC_Os06g39970
OsAffx.15853.1.S1_at--414--1631Chr06:23779503..23779527 (25 bp)
AGCGACCGGCGGCAGGAAACGATGA
LOC_Os06g39970
OsAffx.15853.1.S1_at--1048--3931Chr06:23779554..23779578 (25 bp)
CGGAGATTACGATGCGGTGGACGAA
LOC_Os06g39970
OsAffx.15853.1.S1_at--593--7711Chr06:23779648..23779672 (25 bp)
GGTGGACCACGGGTACTACCAGTCG
LOC_Os06g39970
OsAffx.15853.1.S1_at--721--5851Chr06:23779652..23779676 (25 bp)
GACCACGGGTACTACCAGTCGTGGG
LOC_Os06g39970
OsAffx.15853.1.S1_at--274--8631Chr06:23779713..23779737 (25 bp)
TGGTGGCGCACCTTCAGGGATTCCT
LOC_Os06g39970
OsAffx.15853.1.S1_at--958--7311Chr06:23779784..23779808 (25 bp)
GTGCTCTGGTCGGTGGTCTTCGTCT
LOC_Os06g39970
Target Sequence 
TCGGTCGCGCTCGAGCTGAGGTGGAGCCGCGTGCCACTGCGGGCGTGGTGGCGAGACGAGAAGCTCTGGATGGTCACCGC
CACATCGGCGAGCCTCGCCGCCGTGTTCCAGGGCATCCTCAGCGCGTGCACCGGGATCGACGTCGCCTTCTCCACGGAGA
CGGCAGCTTCGCCACCCAAGCGACCGGCGGCAGGAAACGATGACGGGGAAGAGGAGGCAGCATTGGCATCGGAGATTACG
ATGCGGTGGACGAACCTGTTGGTGGCGCCGACGAGCGTGGTGGTGGCGAACCTCGCCGGGGTGGTGGCGGCGGTGGCGTA
CGGGGTGGACCACGGGTACTACCAGTCGTGGGGCGCGCTCGGCGCGAAGCTGGCGCTCGCCGGGTGGGTGGTGGCGCACC
TTCAGGGATTCCTCCGGGGGCTCCTGGCGCCGCGAGACCGGGCGCCGCCGACCATCGCCGTGCTCTGGTCGGTGGTCTTC
GTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis