Browse Element(s) Details


OsAffx.28017.1.S1_at

Description tigr:9634.m03831
TID=OsAffx.28017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g399609/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39930NANA6+23747418..23753573retrotransposon protein, putative, unclassified
LOC_Os06g39940NANA6+23753901..23757420transposon protein, putative, unclassified
LOC_Os06g39950NANA6+23759287..23763196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39960Os.16025.1.S1_s_at11/116+23772210..23775741bZIP transcription factor family protein, expressed
LOC_Os06g39960OsAffx.28017.1.S1_at9/116+23772210..23775741bZIP transcription factor family protein, expressed
LOC_Os06g39970OsAffx.15853.1.S1_x_at11/116+23776682..23779891Cellulose synthase family protein
LOC_Os06g39970OsAffx.15853.1.S1_at11/116+23776682..23779891Cellulose synthase family protein
LOC_Os06g39980NANA6+23785620..23787341retrotransposon protein, putative, unclassified
LOC_Os06g39990NANA6+23788041..23790187retrotransposon protein, putative, unclassified
LOC_Os06g40000Os.54287.1.S1_at1/116+23790731..23794097hypothetical protein
LOC_Os06g40010Os.57365.1.S1_at11/116+23794589..23795132expressed protein
LOC_Os06g40010OsAffx.28452.1.S1_x_at3/116+23794589..23795132expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009640biological_processphotomorphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28017.1.S1_at--133--451Chr06:23775467..23775491 (25 bp)
ATGAACTTACCTATTTATGCCTTCT
LOC_Os06g39960
OsAffx.28017.1.S1_at--703--8971Chr06:23775468..23775492 (25 bp)
TGAACTTACCTATTTATGCCTTCTC
LOC_Os06g39960
OsAffx.28017.1.S1_at--581--5471Chr06:23775469..23775493 (25 bp)
GAACTTACCTATTTATGCCTTCTCG
LOC_Os06g39960
OsAffx.28017.1.S1_at--132--2531Chr06:23775470..23775494 (25 bp)
AACTTACCTATTTATGCCTTCTCGA
LOC_Os06g39960
OsAffx.28017.1.S1_at--225--2051Chr06:23775471..23775495 (25 bp)
ACTTACCTATTTATGCCTTCTCGAA
LOC_Os06g39960
OsAffx.28017.1.S1_at--316--3651Chr06:23775472..23775496 (25 bp)
CTTACCTATTTATGCCTTCTCGAAT
LOC_Os06g39960
OsAffx.28017.1.S1_at--781--10451Chr06:23775473..23775497 (25 bp)
TTACCTATTTATGCCTTCTCGAATC
LOC_Os06g39960
OsAffx.28017.1.S1_at--983--9971Chr06:23775474..23775498 (25 bp)
TACCTATTTATGCCTTCTCGAATCA
LOC_Os06g39960
OsAffx.28017.1.S1_at--395--1751Chr06:23775475..23775499 (25 bp)
ACCTATTTATGCCTTCTCGAATCAA
LOC_Os06g39960
Target Sequence 
ATGAACTTACCTATTTATGCCTTCTCGAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis