Browse Element(s) Details


Os.16025.1.S1_s_at

Description gb:CA764046
DB_XREF= gi:27545851
DB_XREF=AF53-Rpf_02_A09_T7_033.ab1
CLONE=C0000393
TID=Os.16025.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16025 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T50922 (A.thaliana) T50922 bZIP protein HY5 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3996011/11bZIP transcription factor family protein, expressed
LOC_Os11g277301/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39930NANA6+23747418..23753573retrotransposon protein, putative, unclassified
LOC_Os06g39940NANA6+23753901..23757420transposon protein, putative, unclassified
LOC_Os06g39950NANA6+23759287..23763196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39960Os.16025.1.S1_s_at11/116+23772210..23775741bZIP transcription factor family protein, expressed
LOC_Os06g39960OsAffx.28017.1.S1_at9/116+23772210..23775741bZIP transcription factor family protein, expressed
LOC_Os06g39970OsAffx.15853.1.S1_x_at11/116+23776682..23779891Cellulose synthase family protein
LOC_Os06g39970OsAffx.15853.1.S1_at11/116+23776682..23779891Cellulose synthase family protein
LOC_Os06g39980NANA6+23785620..23787341retrotransposon protein, putative, unclassified
LOC_Os06g39990NANA6+23788041..23790187retrotransposon protein, putative, unclassified
LOC_Os06g40000Os.54287.1.S1_at1/116+23790731..23794097hypothetical protein
LOC_Os06g40010Os.57365.1.S1_at11/116+23794589..23795132expressed protein
LOC_Os06g40010OsAffx.28452.1.S1_x_at3/116+23794589..23795132expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009640biological_processphotomorphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16025.1.S1_s_at--852--1131Chr06:23775232..23775256 (25 bp)
AGTGCCGGCGGAGACAGCTAGTAAC
LOC_Os06g39960
Os.16025.1.S1_s_at--570--7031Chr06:23775252..23775276 (25 bp)
GTAACCGCAATCTGTAGTCTGGAAT
LOC_Os06g39960
Os.16025.1.S1_s_at--453--1552Chr06:23775299..23775323 (25 bp)
AGCTTGGCTAGCTCCATTTGGCAGA
LOC_Os06g39960
Os.16025.1.S1_s_at--1008--2632Chr06:23775408..23775432 (25 bp)
AACCATTCTTGGCTATGCACCTGAA
LOC_Os06g39960
Os.16025.1.S1_s_at--6--1171Chr06:23775435..23775459 (25 bp)
AGTACTCGTTAGTGCTAGCCAGATC
LOC_Os06g39960
Os.16025.1.S1_s_at--92--771Chr06:23775525..23775549 (25 bp)
ATGTCTACCTCCTATTGGCGGATTG
LOC_Os06g39960
Os.16025.1.S1_s_at--93--10751Chr06:23775547..23775571 (25 bp)
TTGGCCGAGCCCTGCAAAAGTGTAA
LOC_Os06g39960
Os.16025.1.S1_s_at--633--2991Chr06:23775574..23775598 (25 bp)
AATGTATGTAATTCCGCCATTCCGG
LOC_Os06g39960
Os.16025.1.S1_s_at--1035--71Chr06:23775592..23775616 (25 bp)
ATTCCGGCCGTCAAATGGTGCGCAC
LOC_Os06g39960
Os.16025.1.S1_s_at--210--7771Chr06:23775608..23775632 (25 bp)
GGTGCGCACAAACGTCTACTGTTGA
LOC_Os06g39960
Os.16025.1.S1_s_at--615--2071Chr06:23775667..23775691 (25 bp)
ACAGTAGCCGGTATTCAGTAGGAAT
LOC_Os06g39960
Target Sequence 
AGTGCCGGCGGAGACAGCTAGTAACCGCAATCTGTAGTCTGGAATCTGGAGTTCGATTAATTTTGTTAGCTTGGCTAGCT
CCATTTGGCAGAGTCACAACTAAGACTCAAAGGGAAGCTGCTCCCTTTTGATTGATTTGTAGTTTCTTAGATAAAATTAA
TTACTACATTAAATACAACCATTCTTGGCTATGCACCTGAATAAGTACTCGTTAGTGCTAGCCAGATCGAGACAAATGAA
CTTACNTATNTANGCCTTCTCGAATCAACTCTGGAAGGCATATAATTGTTTCCATGTCTACCTCCTATTGGCGGATTGGC
CGAGCCCTGCAAAAGTGTAATAAATGTATGTAATTCCGCCATTCCGGCCGTCAAATGGTGCGCACAAACGTCTACTGTTG
AAGATGACAGTGTCAGTACGGTATATTGTTGAAGAACAGTAGCCGGTATTCAGTAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16025.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis