Browse Element(s) Details


Os.8783.1.S1_at

Description gb:AK072392.1
DB_XREF= gi:32982415
TID=Os.8783.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075O16, full insert sequence.
FL= gb:AK072392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0749011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07430OsAffx.5240.1.S1_at11/117+3705107..3706216CAF1 family ribonuclease containing protein
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed
LOC_Os07g07500OsAffx.16136.1.S1_at11/117+3731691..3733640hypothetical protein
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07530Os.54674.1.S1_at11/117+3752692..3756154expressed protein
LOC_Os07g07530Os.29072.1.S1_at3/117+3752692..3756154expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8783.1.S1_at--665--6831Chr07:3725452..3725476 (25 bp)
GTTTCTGTAAATGGTGTTACCCCAG
LOC_Os07g07490
Os.8783.1.S1_at--117--6771Chr07:3725437..3725461 (25 bp)
GTTACCCCAGAAGATGTTCAGTTGA
LOC_Os07g07490
Os.8783.1.S1_at--302--1251Chr07:3725403..3725427 (25 bp)
AGTTGGCCAGTTTGAGCGTCTGTTA
LOC_Os07g07490
Os.8783.1.S1_at--312--4651Chr07:3725388..3725412 (25 bp)
GCGTCTGTTAAGTTTTTTCTCATCA
LOC_Os07g07490
Os.8783.1.S1_at--799--10571Chr07:3725372..3725396 (25 bp)
TTCTCATCATTTCAGCCATTGAGGG
LOC_Os07g07490
Os.8783.1.S1_at--377--8651Chr07:3725319..3725343 (25 bp)
TGGGAAGGCAGCAATCAAGGCAATT
LOC_Os07g07490
Os.8783.1.S1_at--119--8891Chr07:3725283..3725307 (25 bp)
TGAGTTTCCTTGTGAGTTTCTCCGT
LOC_Os07g07490
Os.8783.1.S1_at--878--10551Chr07:3725266..3725290 (25 bp)
TTCTCCGTTGCTTTTGGTTAGGACT
LOC_Os07g07490
Os.8783.1.S1_at--228--10591Chr07:3725101..3725125 (25 bp)
TTCTCTTTTGCGTTGGGCAGGTGTA
LOC_Os07g07490
Os.8783.1.S1_at--33--6931Chr07:3725066..3725090 (25 bp)
GTATGTTTGGTGTCTGAACCTGAAA
LOC_Os07g07490
Os.8783.1.S1_at--804--5591Chr07:3725004..3725028 (25 bp)
GAAATTTACTCTTTTGTTCCAATGC
LOC_Os07g07490
Target Sequence 
GTTTCTGTAAATGGTGTTACCCCAGAAGATGTTCAGTTGACAAACGAGAAGTTGGCCAGTTTGAGCGTCTGTTAAGTTTT
TTCTCATCATTTCAGCCATTGAGGGGTGGTGTAAGGTGAAGGGCTATATAGGTTGGGAAGGCAGCAATCAAGGCAATTCA
AGATCCATTTGAGTTTCCTTGTGAGTTTCTCCGTTGCTTTTGGTTAGGACTTGGAGGTGGTTTCATAGGAGAGCTAGAAG
TTTAGCTGATTGTGTCTGGTGAGATGTGCGGATAGCAGTAGAGGTTTTTTGGACTTTTGGTTTTCAATGATGGATCATTG
GTTTGCNCAGTTCCTTTTCTTTTATATTCTGTTCTCTTTTGCGTTGGGCAGGTGTAGCTTTTTTTAGTATGTTTGGTGTC
TGAACCTGAAAGCATGTCAAGAGTGTTTAAACCTGGGAATTCAATTAAGAAATTTACTCTTTTGTTCCAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis