Browse Element(s) Details


OsAffx.16135.1.S1_x_at

Description tigr:9635.m00691
TID=OsAffx.16135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=short-chain type dehydrogenasereductase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0745011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07380OsAffx.28324.1.S1_at11/117+3686657..3687025hypothetical protein
LOC_Os07g07390OsAffx.12670.1.S1_at1/117+3688467..3690622Calcium binding EGF domain containing protein
LOC_Os07g07400OsAffx.16134.1.S1_at11/117+3696970..3697428AN1-like Zinc finger family protein
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07430OsAffx.5240.1.S1_at11/117+3705107..3706216CAF1 family ribonuclease containing protein
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed
LOC_Os07g07500OsAffx.16136.1.S1_at11/117+3731691..3733640hypothetical protein
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0004316molecular_function3-oxoacyl-[acyl-carrier protein] reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16135.1.S1_x_at--94--7071Chr07:3712143..3712167 (25 bp)
GTCAAGGCCGACGTGTCCGACGAGA
LOC_Os07g07450
OsAffx.16135.1.S1_x_at--389--7571Chr07:3712070..3712094 (25 bp)
GGGCGCACATCCTCGTGGCGAACGC
LOC_Os07g07450
OsAffx.16135.1.S1_x_at--86--5451Chr07:3712051..3712075 (25 bp)
GAACGCCGGCTTGCTCGACGACAGG
LOC_Os07g07450
OsAffx.16135.1.S1_x_at--307--1831Chr07:3712049..3712073 (25 bp)
ACGCCGGCTTGCTCGACGACAGGTA
LOC_Os07g07450
OsAffx.16135.1.S1_x_at--249--4931Chr07:3712043..3712067 (25 bp)
GCTTGCTCGACGACAGGTACCCGCA
LOC_Os07g07450
OsAffx.16135.1.S1_x_at--959--5611Chr07:3712032..3712056 (25 bp)
GACAGGTACCCGCACCTGTCGAACA
LOC_Os07g07450
OsAffx.16135.1.S1_x_at--5--9151Chr07:3711875..3711899 (25 bp)
TGCCGCCTGGCTACTCGGCGTACAC
LOC_Os07g07450
OsAffx.16135.1.S1_x_at--1069--1871Chr07:3711725..3711749 (25 bp)
ACGAGGCGTGGGTGAAGCGCACCGT
LOC_Os07g07450
OsAffx.16135.1.S1_x_at--620--7351Chr07:3711714..3711738 (25 bp)
GTGAAGCGCACCGTGGATGCCAACC
LOC_Os07g07450
OsAffx.16135.1.S1_x_at--403--8991Chr07:3711713..3711737 (25 bp)
TGAAGCGCACCGTGGATGCCAACCC
LOC_Os07g07450
OsAffx.16135.1.S1_x_at--203--2091Chr07:3711662..3711686 (25 bp)
ACATCGCCGCCATGGTCGGCTTCCT
LOC_Os07g07450
Target Sequence 
GTCAAGGCCGACGTGTCCGACGAGACGGGCGTCCGCGCCCTCTTCGACGCCGCCGAGTCGGCCTTCGGCGCCGGGGCGCA
CATCCTCGTGGCGAACGCCGGCTTGCTCGACGACAGGTACCCGCACCTGTCGAACACCCCCACCGCCGACTTCGACCGCA
CCATCGCCGTCAACCTGCGCGGCGCGTTCCTCTGCCTCCGCGAGGCGGCGAACCGCCTCCCCCGCGGCGGCCGCATCGTG
GCCATCACCTCGTCGGTGGTCGCGTCGCTGCCGCCTGGCTACTCGGCGTACACGGCGTCCAAGGCGGCGGTGGAGGCGAT
GGTGCGGACCATGGCGAAGGAGCTCAAGGGCACCGGCATCACGGCGAACTGCGTCGCGCCGGGCCCCGTGGCGACGGACA
TGTTCTTCGCCGGCAAGGACGAGGCGTGGGTGAAGCGCACCGTGGATGCCAACCCGACGGGGCGGCTCGGCGATCCCGGC
GACATCGCCGCCATGGTCGGCTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16135.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis