Browse Element(s) Details


OsAffx.4567.2.S1_at

Description tigr:9633.m03736
TID=OsAffx.4567.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY-type DNA binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4006011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40010OsAffx.27248.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010OsAffx.27248.1.S1_x_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010Os.16271.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40020Os.57149.1.S1_at11/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40020Os.35921.2.S1_x_at1/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40030NANA5+23428589..23429032hypothetical protein
LOC_Os05g40040OsAffx.15034.1.S1_at11/115+23431884..23436764expressed protein
LOC_Os05g40050OsAffx.27250.2.S1_at11/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40050OsAffx.22147.1.S1_x_at1/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40060OsAffx.4567.2.S1_at11/115+23446217..23447293WRKY DNA binding domain containing protein, expressed
LOC_Os05g40070OsAffx.15035.1.S1_at11/115+23453168..23455737WRKY DNA binding domain containing protein
LOC_Os05g40080OsAffx.4567.1.S1_at11/115+23467405..23468510WRKY DNA binding domain containing protein
LOC_Os05g40090OsAffx.24046.2.S1_x_at11/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.7.S1_x_at4/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.3.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.5.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4567.2.S1_at--918--4991Chr05:23446688..23446712 (25 bp)
GCAGTCGGAGGAAGACCCTTCCCTC
LOC_Os05g40060
OsAffx.4567.2.S1_at--700--931Chr05:23446680..23446704 (25 bp)
AGGAAGACCCTTCCCTCTACGTCAT
LOC_Os05g40060
OsAffx.4567.2.S1_at--739--1851Chr05:23446590..23446614 (25 bp)
ACGACGATGAAAACTCGCAGCATTT
LOC_Os05g40060
OsAffx.4567.2.S1_at--902--2411Chr05:23446581..23446605 (25 bp)
AAAACTCGCAGCATTTCGTCATCAA
LOC_Os05g40060
OsAffx.4567.2.S1_at--193--951Chr05:23446392..23446416 (25 bp)
AGGAAGAGCCAGTGGACTCGTGTCC
LOC_Os05g40060
OsAffx.4567.2.S1_at--844--8411Chr05:23446343..23446367 (25 bp)
GGCCGACGTCGTTTCTTGTTCGTCT
LOC_Os05g40060
OsAffx.4567.2.S1_at--681--6831Chr05:23446333..23446357 (25 bp)
GTTTCTTGTTCGTCTCCGGCAATGG
LOC_Os05g40060
OsAffx.4567.2.S1_at--93--9291Chr05:23446319..23446343 (25 bp)
TCCGGCAATGGAGCCCGATCTGCTG
LOC_Os05g40060
OsAffx.4567.2.S1_at--470--9071Chr05:23446291..23446315 (25 bp)
TGCTTGAACTGGGATGATGACTTTG
LOC_Os05g40060
OsAffx.4567.2.S1_at--56--2051Chr05:23446272..23446296 (25 bp)
ACTTTGGAGACAGCTCGTTCGTCGA
LOC_Os05g40060
OsAffx.4567.2.S1_at--1013--1811Chr05:23446248..23446272 (25 bp)
ACGCCGATGAGTTCATGAATTTCGA
LOC_Os05g40060
Target Sequence 
GCAGTCGGAGGAAGACCCTTCCCTCTACGTCATCACCTACTTCGGCGACCACACCTGCAGCTGCCAGACGGCCGCCGCCG
CCGCCATGGACGACGACGACGACGATGAAAACTCGCAGCATTTCGTCATCAACTTCGGGCCGGCCACCGCGAGCCGCAGC
GGTTCGCCGCCTCTGCTCTACGACGACGGCGACGACGGCGATGTCTGGAGGGAGACGGCGGCCACCCCACCGTCGTCGAG
GCAGTCCAGGTGCTCGCCGGAGGGAGACGGGGAGGAATCCGGGGTGAAGATGAGCAAGGAAGAGCCAGTGGACTCGTGTC
CGGGGCCGTCAGCGGTGAGTTCGCCGGCCGACGTCGTTTCTTGTTCGTCTCCGGCAATGGAGCCCGATCTGCTGGGCTGC
TTGAACTGGGATGATGACTTTGGAGACAGCTCGTTCGTCGACGCCGATGAGTTCATGAATTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4567.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis