Browse Element(s) Details


OsAffx.4567.1.S1_at

Description tigr:9633.m03738
TID=OsAffx.4567.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4008011/11WRKY DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40050OsAffx.27250.2.S1_at11/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40050OsAffx.22147.1.S1_x_at1/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40060OsAffx.4567.2.S1_at11/115+23446217..23447293WRKY DNA binding domain containing protein, expressed
LOC_Os05g40070OsAffx.15035.1.S1_at11/115+23453168..23455737WRKY DNA binding domain containing protein
LOC_Os05g40080OsAffx.4567.1.S1_at11/115+23467405..23468510WRKY DNA binding domain containing protein
LOC_Os05g40090OsAffx.24046.2.S1_x_at11/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.7.S1_x_at4/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.3.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.5.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40100OsAffx.10222.1.S1_x_at2/115+23473740..23475130hypothetical protein
LOC_Os05g40100OsAffx.727.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.10263.1.S1_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.51841.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40110OsAffx.23890.2.S1_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.2.S1_x_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.4.S1_x_at1/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40120NANA5+23487966..23488975hypothetical protein
LOC_Os05g40130OsAffx.4570.1.S1_at11/115+23489476..23490046hypothetical protein
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4567.1.S1_at--307--1491Chr05:23467880..23467904 (25 bp)
AGCAAGTCCAGCAGTCGGAGACGGC
LOC_Os05g40080
OsAffx.4567.1.S1_at--565--992Chr04:21613679..21613966 (25 bp)
AGGAGGATCAGCTCTCGCCGGCGCA
NONE
OsAffx.4567.1.S1_at--772--3431Chr05:23467728..23467752 (25 bp)
CAGATGGTCATCAGCTTCGCTTCCA
LOC_Os05g40080
OsAffx.4567.1.S1_at--38--5791Chr05:23467662..23467686 (25 bp)
GACGACGCCCAGAACAACAGCGAGA
LOC_Os05g40080
OsAffx.4567.1.S1_at--31--5991Chr05:23467641..23467665 (25 bp)
GAGACATCGCATGAATCGAGCCCGC
LOC_Os05g40080
OsAffx.4567.1.S1_at--246--951Chr05:23467598..23467622 (25 bp)
AGGAAGAACGTCTGCGGCCGTGCAC
LOC_Os05g40080
OsAffx.4567.1.S1_at--1061--4651Chr05:23467565..23467589 (25 bp)
GCGTGTCTGACGAACCGATCATGGA
LOC_Os05g40080
OsAffx.4567.1.S1_at--178--5451Chr05:23467554..23467578 (25 bp)
GAACCGATCATGGAGTCAACGCCGC
LOC_Os05g40080
OsAffx.4567.1.S1_at--1013--10551Chr05:23467517..23467541 (25 bp)
TTCTTGCGGATCTGAAGCCCATGGA
LOC_Os05g40080
OsAffx.4567.1.S1_at--1093--10751Chr05:23467481..23467505 (25 bp)
TTGACGGCGAGAGCTTGTTTGGCAT
LOC_Os05g40080
OsAffx.4567.1.S1_at--345--5471Chr05:23467452..23467476 (25 bp)
GAACTCGTCTACTTTCATGAGCTCT
LOC_Os05g40080
Target Sequence 
AGCAAGTCCAGCAGTCGGAGACGGCGGACGACGACACTGCCTCGCCCGTCTACATCATCACCTACTTCGGCGAGCACACC
TGCCGCCATGGGGACGACGCCGCCGCCATGGTCGTCGACGGCGGCGAGGAGGAGGATCAGCTCTCGCCGGCGCAGATGGT
CATCAGCTTCGCTTCCAGCAACGGCGGCGATGCTTCTGTGTCCTGGCCGTGCTCCGGCGACGACGCCCAGAACAACAGCG
AGACATCGCATGAATCGAGCCCGCCGGAGGCGCCGGCCGGCGAGGAAGAACGTCTGCGGCCGTGCACAGCCGCCGGCGTG
TCTGACGAACCGATCATGGAGTCAACGCCGCCGGCGCCGGAGCTTCTTGCGGATCTGAAGCCCATGGATGGGTGCCTCCT
TGACGGCGAGAGCTTGTTTGGCATGGATGAACTCGTCTACTTTCATGAGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis