Browse Element(s) Details


OsAffx.23890.2.S1_at

Description tigr:9631.m03806
TID=OsAffx.23890.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3960210/11hypothetical protein
LOC_Os02g456405/11hypothetical protein
LOC_Os01g621705/11hypothetical protein
LOC_Os05g401105/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39570OsAffx.27757.1.S1_at2/113+21924337..21927780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39570OsAffx.23366.2.S1_s_at1/113+21924337..21927780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39580NANA3+21929885..21933177retrotransposon protein, putative, unclassified
LOC_Os03g39590NANA3+21933805..21938237retrotransposon protein, putative, unclassified
LOC_Os03g39594Os.46314.3.S1_at3/113+21943595..21944662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39598OsAffx.7362.1.S1_x_at1/113+21945217..21948592transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39602OsAffx.23890.2.S1_x_at11/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.2.S1_at10/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.4.S1_x_at5/113+21950620..21952648hypothetical protein
LOC_Os03g39610Os.12296.1.S1_at8/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39610Os.28216.3.S1_x_at1/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39620OsAffx.23962.2.S1_at11/113+21962978..21963847hypothetical protein
LOC_Os03g39629OsAffx.25439.1.S1_at11/113+21965707..21966173hypothetical protein
LOC_Os03g39640OsAffx.3448.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed
LOC_Os03g39640Os.17963.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23890.2.S1_at--244--10136Chr07:5518543..5518567 (25 bp)
TATGAGCTACTCCTATGGGCTCGGA
NONE
OsAffx.23890.2.S1_at--939--696Chr07:5518544..5518568 (25 bp)
ATGAGCTACTCCTATGGGCTCGGAA
NONE
OsAffx.23890.2.S1_at--1072--8896Chr07:5518545..5518569 (25 bp)
TGAGCTACTCCTATGGGCTCGGAAG
NONE
OsAffx.23890.2.S1_at--406--5916Chr07:5518546..5518570 (25 bp)
GAGCTACTCCTATGGGCTCGGAAGG
NONE
OsAffx.23890.2.S1_at--792--1576Chr07:5518547..5518571 (25 bp)
AGCTACTCCTATGGGCTCGGAAGGA
NONE
OsAffx.23890.2.S1_at--894--8111NONE
GGACGGCGGGGACTGCGACTGGTGA
NONE
OsAffx.23890.2.S1_at--990--6291Chr03:21952547..21952571 (25 bp)
GATGATGGCAGCGGGACGGAGCTCA
LOC_Os03g39602
OsAffx.23890.2.S1_at--125--3991Chr03:21952558..21952582 (25 bp)
CGGGACGGAGCTCAGCGAGGGTGCT
LOC_Os03g39602
OsAffx.23890.2.S1_at--354--4071Chr03:21952573..21952597 (25 bp)
CGAGGGTGCTCTAGTGGACGCCATT
LOC_Os03g39602
OsAffx.23890.2.S1_at--24--1071Chr03:21952575..21952599 (25 bp)
AGGGTGCTCTAGTGGACGCCATTGA
LOC_Os03g39602
OsAffx.23890.2.S1_at--394--7711Chr03:21952576..21952600 (25 bp)
GGGTGCTCTAGTGGACGCCATTGAG
LOC_Os03g39602
Target Sequence 
TATGAGCTACTCCTATGGGCTCGGAAGGAACTCAAGAACTTGGAGGTCGTCACGGCGGATGACGGCGGCGGTGGCGGTGG
CAACACCGTTACCGTGCATGGCGACAAGGCTCCCGTTGACGGCAAAGGAGAGGCAGCGAGTCCGGCGAAACGCGCCGACG
TATCAGGTGGCCAAGAATGCGGCGTGGTCTGCGTGGAGGATGTACAGCGAGTGGAGACGCCAGCTGCAGAGATCACGAAT
GCCATGAAGGACACGGAGATCGTGAAGAATAAGGACCAGGAGAGAGGAGGCAGCAAGAGGGAAGAAGAGGAGACCGTCGC
AATGGCCGGCACGGGGAGCAGGGAGGAAGCATTGCTGGTTCTCTTCGATACAGCATGGCAACAGGGGAACCTCCTTACCG
GCGGGAGCGGCGGGACGGCGGGGACTGCGACTGGTGATGATGGCAGCGGGACGGAGCTCAGCGAGGGTGCTCTAGTGGAC
GCCATTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23890.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis