Browse Element(s) Details


OsAffx.23962.2.S1_at

Description tigr:9631.m03808
TID=OsAffx.23962.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3962011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39590NANA3+21933805..21938237retrotransposon protein, putative, unclassified
LOC_Os03g39594Os.46314.3.S1_at3/113+21943595..21944662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39598OsAffx.7362.1.S1_x_at1/113+21945217..21948592transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39602OsAffx.23890.2.S1_x_at11/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.2.S1_at10/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.4.S1_x_at5/113+21950620..21952648hypothetical protein
LOC_Os03g39610Os.12296.1.S1_at8/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39610Os.28216.3.S1_x_at1/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39620OsAffx.23962.2.S1_at11/113+21962978..21963847hypothetical protein
LOC_Os03g39629OsAffx.25439.1.S1_at11/113+21965707..21966173hypothetical protein
LOC_Os03g39640OsAffx.3448.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed
LOC_Os03g39640Os.17963.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23962.2.S1_at--1075--6675Chr08:24022730..24022754 (25 bp)
GTTGCGCCGGTTCGCAATCTTGAAT
NONE
OsAffx.23962.2.S1_at--1006--4479Chr12:20720790..20720832 (25 bp)
GCCGGTTCGCAATCTTGAATCGCCT
NONE
OsAffx.23962.2.S1_at--741--5174Chr03:21963292..21963316 (25 bp)
GCAATCTTGAATCGCCTCCCACTGT
LOC_Os03g39620
OsAffx.23962.2.S1_at--47--8671Chr03:21963314..21963338 (25 bp)
TGTGGAACTCGCCAATCGCCAATCA
LOC_Os03g39620
OsAffx.23962.2.S1_at--312--4391Chr03:21963324..21963348 (25 bp)
GCCAATCGCCAATCACAACGAACGA
LOC_Os03g39620
OsAffx.23962.2.S1_at--501--4394Chr08:24022775..24022799 (25 bp)
GCCAATCACAACGAACGAGAGGAGT
NONE
OsAffx.23962.2.S1_at--226--6131Chr03:21963349..21963373 (25 bp)
GAGGAGTAAACGACGCCTTACCTCT
LOC_Os03g39620
OsAffx.23962.2.S1_at--307--10551Chr03:21963439..21963600 (25 bp)
TTCTTTCCGGGCCACCCTGCTGGTG
LOC_Os03g39620
OsAffx.23962.2.S1_at--241--6151Chr03:21963619..21963643 (25 bp)
GAGGTGCAGCCATGTAGGCCTGCAA
LOC_Os03g39620
OsAffx.23962.2.S1_at--297--751Chr03:21963630..21963654 (25 bp)
ATGTAGGCCTGCAAGCGGTTGTCCC
LOC_Os03g39620
OsAffx.23962.2.S1_at--780--7291Chr03:21963748..21963772 (25 bp)
GTGCGGCCCCGCCAATGCTGACATG
LOC_Os03g39620
Target Sequence 
GTTGCGCCGGTTCGCAATCTTGAATCGCCTCCCACTGTGGAACTCGCCAATCGCCAATCACAACGAACGAGAGGAGTAAA
CGACGCCTTACCTCTCTCTCTCGTGCGGTCGTGCCGCCTAACGCCGTCGCCGCCTGACACCTGTCACGCCCCTGACCTAA
TTCTTTCCGGGCCACCCTGCTGGTGGGAGTGGGAGACCAGCAGGAGGTGCAGCCATGTAGGCCTGCAAGCGGTTGTCCCC
GAGGTGGCGAGCGGCGGCGCGCACCGTGGACTGGAGGCCACCCTCCGCAACATTGTCCGCCGACCTCTTGCCTTCCTCTC
CGCCTCCGGCTCGTGCGGCCCCGCCAATGCTGACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23962.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis