Browse Element(s) Details


OsAffx.4570.1.S1_at

Description tigr:9633.m03743
TID=OsAffx.4570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4013011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40080OsAffx.4567.1.S1_at11/115+23467405..23468510WRKY DNA binding domain containing protein
LOC_Os05g40090OsAffx.24046.2.S1_x_at11/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.7.S1_x_at4/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.3.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40090OsAffx.24046.5.S1_x_at1/115+23469748..23472108hAT family dimerisation domain containing protein
LOC_Os05g40100OsAffx.10222.1.S1_x_at2/115+23473740..23475130hypothetical protein
LOC_Os05g40100OsAffx.727.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.10263.1.S1_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40100Os.51841.1.S1_x_at1/115+23473740..23475130hypothetical protein
LOC_Os05g40110OsAffx.23890.2.S1_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.2.S1_x_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.4.S1_x_at1/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40120NANA5+23487966..23488975hypothetical protein
LOC_Os05g40130OsAffx.4570.1.S1_at11/115+23489476..23490046hypothetical protein
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified
LOC_Os05g40150OsAffx.27252.1.S1_at11/115+23498045..23502194NB-ARC domain containing protein
LOC_Os05g40160Os.50474.1.S1_at11/115+23503562..23507180NB-ARC domain containing protein, expressed
LOC_Os05g40170Os.4820.1.S1_at11/115+23509834..23512004expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4570.1.S1_at--1105--7611Chr05:23489875..23489899 (25 bp)
GGGAAATTTATTGCCATCGTCCTTC
LOC_Os05g40130
OsAffx.4570.1.S1_at--262--3131Chr05:23489871..23489895 (25 bp)
AATTTATTGCCATCGTCCTTCTTGG
LOC_Os05g40130
OsAffx.4570.1.S1_at--1072--1791Chr05:23489804..23489828 (25 bp)
ACCGCGATGGGAGCTTGCTACCAGC
LOC_Os05g40130
OsAffx.4570.1.S1_at--846--10611Chr05:23489706..23489730 (25 bp)
TTCGGCTACGCTCCGGTGCTGCCAG
LOC_Os05g40130
OsAffx.4570.1.S1_at--301--4251Chr05:23489658..23489682 (25 bp)
CCGTCGCCGCTGCTAACGAAGAAAG
LOC_Os05g40130
OsAffx.4570.1.S1_at--627--4151Chr05:23489654..23489678 (25 bp)
CGCCGCTGCTAACGAAGAAAGAGAA
LOC_Os05g40130
OsAffx.4570.1.S1_at--455--1351Chr05:23489635..23489659 (25 bp)
AGAGAAAATACTACCACCGTCGCTA
LOC_Os05g40130
OsAffx.4570.1.S1_at--1049--1771Chr05:23489620..23489644 (25 bp)
ACCGTCGCTACTGCCAACGAAGAAA
LOC_Os05g40130
OsAffx.4570.1.S1_at--344--4852Chr02:1722317..1722337 (21 bp)
GCTACTGCCAACGAAGAAAGAGAGA
NONE
OsAffx.4570.1.S1_at--970--8031Chr05:23489539..23489603 (25 bp)
GGAGTCACTGACAGGATGCCTCGTA
LOC_Os05g40130
OsAffx.4570.1.S1_at--380--2131Chr05:23489529..23489551 (23 bp)
ACAGGATGCCTCGTAGGTGCCACAT
LOC_Os05g40130
Target Sequence 
GGGAAATTTATTGCCATCGTCCTTCTTGGCTCGTCGTCCCAGATGCCAACCGTTGCCCCCGGTTCCGCCGCACCGCGATG
GGAGCTTGCTACCAGCCGCCGCCGCTGTTCCACTCGTCCTCCCACTGCCGCGAGCCGCCGCCGCCCTAGCCGCCGACCGC
CGCCCCCGGTTCGGCTACGCTCCGGTGCTGCCAGCCGCCGCCACTCCCCTCGTCCCCCCGTCGCCGCTGCTAACGAAGAA
AGAGAAAATACTACCACCGTCGCTACTGCCAACGAAGAAAGAGAGAATATAGGAGGGGAGTCACTGACAGGATGCCTCGT
AGGTGCCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis